Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g00112 ATGCATGGGTGCGGTCGTGACCAGTCGAAACACAATCGGCACATGTGGCCTGTACCTGCTAACGCGACCACTGTAGCCATCGATCCTTCACCGTCTCAATTTAAATGCAAAGATGGACGCAAGATTCGCGCTGGTGATTGTGCACTTTTCAAGGCACCCAGGGACTCCCCTCCTTTTATTGGAATAATTCGCAAGTTAACATTTGATAAAGAAGAAAGTCCGAGTTTAGAAGTGAATTGGCTATACCGACCTGCTGATTTGAAGCTTGCTAAAGGGATTGTACTGGAAGCTGCTCCAAACGAAGTTTTCTACTCCTTTCACAAGGATGAAACACCTGCTGCATCATTACTCCATCCGTGTAAAGTCGCATTTCTTCGTAAGGGTGTTGAACTTCCTTCAGGGATATCCGCATTTGTCTGTCGACGAGTATATGACATTGAGAACAATTGTTTATGGTGGTTAACTGATAAGGATTACCTTAATGAACGACAGGAAGAAGTTAACCAGCTATTAGACAAGACAAAACTAGAAATGCATGGGGCTGTGCAGTCAGGAGGCCGTTCTCCAAAGCCCTTGAATGGTCCAACATCAACACAGTCATTGAAATCTGGTTCTGACAACGTTCAAAATAGTTCTTCTTTTGGTGCACAGGGTAAGGGGAAAAAAAGAGAGCGGGGTGATCAGGTTTCTGATTCATCTAAAAAGGAGCGGTTATTTAAGGTAGAAGATGGAGATTCTGGTCAATTTAGATTGGAAAGCATGTTAAAGTCTGAGATTGCTAAAATAACTGATAATAAAGGTGGGCTTGTGGACTTTGAAGGAGTTGAAAGACTGGTACAGCTTATGCAACCTGATAGTGGTGATAAAAAAATAGATTTGGCAGGGCGAATGATGCTTGTCGATGTAATTGCACTTACGGACCGGTATGAGTGTCTATGCGGGTTTGTACAACACAGGGGTTTGCCTGTGTTGGACGAATGGCTGCAGGAGGTCCACAAGGGCAAAATTGGTGAAGGAAATATGCCTAAGGAAAGTGATAAGTCAGTTGATGAGTTTTTGTTAGCTTTACTTCGTGCATTAGATAAGCTTCCTGTGAACCTTCATGCACTGCAAACCTGTAATGTTGGAAAGTCTGTTAATCATTTACGCACCCACAAAAATTATGAAATTCAGAGGAAAGCTAGGAGTTTAGTGGACACATGGAAGAGACGTGTGGAAGCTGAAATGAATATGAATGATTCGAAGTCTGGTTCAAACCGTACCATGTCTTGGCCAGCAAAGTCAGCAAATTCTGAGTCTCCTCAGGTTGGAAATAGGAAAACAGGAGGATCCTCTGATAATGTTGCAAAGAGCTCTTCAGTTCAACCCTCAATATCTAAAAATTCCCAATCTAAGTTAAGTTCTGGAGAAGCACTGTCCAAGTCCTCTTCATCTCCTGGCTCAACTAAGCTAATGACTACCTCAGCGGTCAGTAACTCAAAAGATCAAAACAGTAAAGTCTTGGTTGGAGCTGCAACGTCAGATCTGCCTCTGACACCTATCAAGGAGGAGAGGAGCAGCAGTTCTAGTCAATCTCAAAATAACAGTATATCTTGTTCTAGTGAACATGCTAAAACTATTGGTTCCAGCAGGGAAGATTCGAAGAGCTCCACTGCAGTGTCAGCGAGTGGGGGCAAAATTCCTGGTGGTGCTTCTCGAACACGCAAGTCCAGCAATGGGCTACATGTTACTGGTGTTGCAGTAGGTCCGAAGGAGCACAGCTCTGCAAAAAATTCAGCTAGGAATTCACCTTCTGAAAAAGTTTCTCCAACTCGAGTCCCCCATGAAAAATCAGCTGACCAGCCCCTTACTGATCAAGGGAATAATCAGCGATTGATTCTCCGGTTGCCAAACACTGGTCACAGTCCTTCAAGGGGAGCTAGCGGTGGCTCTTATGAAGAACCAGGTATCACGTGCAGCAAAGCTTCTTCTCCTGCTGACAGGAATGAGAATCAGGACAGAAGAATGAAAACTAGACCTGAGTGTTTGCTGACCCATGTGTCAAATATGATGAATGAGGCATGTGATGCTAGTGAAGCTTTGCTTGGTGTTGACGAAGGTAAGGGCCCTCAAACGGTTGATGAGCGATGCAGGGCTAATGAAGATGGTGATAAGGTAGCAGAATCATCAAAACCGGCTAGTTTGTCATCTGGATTTGTTTCCAGATCAGGGCAGACTTATGATTTAAGCCCCATGAATGCATTAGTTGAAAGCTGTGTGAAAATTTCTGAAGCAAGTGCATCCGTGTCCCATGGAGATGATGGGATGAACCTACTAGCTACTGTGGCTGCTGGGGAAATATCAAGATCTGAAAATGCCTCACCTATGGTATCCCCTGAGAGAAAGTCTCCTCCTGCAGATGAATTGAGCTCAGGCAATGATTTCAAGTTAAAACATTCTGGTGAAGCAGCTGTTTGCTCTCTTTCACAGTCGGATGGTGGGGCTACTGCCGAGCATCCTTTGAACATATTTGATTCATTGCAGATAAAAAATGATTTGAGGCATCCTGCTACAACTTCAGGAGATGGTGACACCATTTCATCCAGTTGTGTTGAGAGAAGTGGTGATGGGAGATCGCAGATAAATAGCTCCCCTACAGATTTCTTACAAGCTGAAGGTCCATGCTTACGGCCTGAAACCAAGGAGGATACTTCTGAAACTATATTGCCAGTTAAAAAGGAGACTAATGCAGACCCTGGAGACTGTAAATTAAAGTCAAGGACTTCTTTTGATGATGATCAGAAGGTTGATCACATGAATGAGGAAACCGCTGAGGATGAGAAAATGTTGGTTCCAAAAGCTGTTGCAAGTGTTAAGTCTGAAAATGAATCGGGTGAAAAACATCCTGAGTTATCCTCAGGTGTGGATAATGAGAACCAGATTAGTGCAGAGAAATCAACAGGTACTGGTATACTAGTGCAAAAGGCCTCTCCAGTTTCTGAAAACTGTGAGTCTTTGTATTTAAAAAAGGAGTCACCTACTTCTGGTAATGCTGTAATGGTATCCAGGGATGAAAATGCTGATGACACGAAGTCAGTTGTGATTGAGCCTGATGAAAGAAGAACAGGGCAGGATTTATCAGTTTCAGATGATGTTAATGAACGTGCTGATACTATGGGTAGAAAAGAGGCTATTGGTCAGTGTTCTGGCTCATCAGTTCATTCAGATTTACCAACAGTGCCTAGGGAAGAGAATGATGCATTTAAAGCATCTGAGCGAAAGTTGGATACAAATAAATCTGAGGTTGCAGGAGAGAGGCATGCATGTTCTGCTGCTGGGTCTGATACTGCTGTAAAACTCGACTTCGATTTAAACGAAGGCTTTCCTGTTGATGATGTAAGCCAAGGGGAGATTGCTAGACAGGAAGATCCTACCACATCATCTGCAGTTCATGTTCCTTGCCCAATGCCTTTCCCTATGACATCCATCTCTGGGGTCTTCCATGCTTCAATTACAGTGGCATCTGCTGCCAAAGGGCCGGTTGTTCCACCTGAAAACCCATTGCGGATTAAGGGGGAGCTTGGATGGAAAGGGTCTGCTGCTACCAGTGCATTTCGGCCAGCTGAACCTAGGAAAAATGCTGAGACACCGCCCACTACTAATGATATTGCTTCTGTTGATGTCACTTCTATCAAACAAGGTCGCGCTCCCTTAGATTTTGATTTAAATGTGGCAGATGAAAGATGTTTTGAGGATGTGGGTTCGTGTGCTTCTTTAGAAGCTGGGCCACATGATCGTAGCACTGGGGGATTTGATTTAAATAAATTTGATGAGACTCCTGAAATTGGTACTTTCTTGATAAGCAAACTGGATATTCCTTCTTTACCAAGTAAGCCTTCGTTGTCCAGTGGGTTATCTAATGGCGGAAGTGTCTCAAGAGACTTTGACTTAAATAATGGACCAGGCCTTGATGAAGTTGGGAGTGAAGTCCCAACACGTAGTCAGCCAATGAAAAGTACTGTACCATTTCCAACTGCTGTTCATGGCACGAGAGCAAACAATGCTGAATTTGGGAATTATTCTGCATGGTTTCCTCCTGGCAATACTTATTCTGCAATTACTGTCCCACCACTTCTGTCCGGCAGAGGGGAGCAGAGTTATGTTGCTGGTGCTGGGGCGCAACGTATAATGGGTCCTACAGGTAGTGCTCCTTTTGGTCCTGAAATCTACAGGGGACCAGTGCTTCCATCCTCTCCAGCTGTTGCTTATCCACCTACTACGCCTTTTCCCTATCCAGGATTTCCATTTGAAACCAATTTTCCATTATCTTCAAACTCTTTGTCTGTTTGTTCAACAGCATTTATGGATTCGTCAACTGTGGGTGGATTATGCTTTCCTACCATGCCCTCACAGCCAGTTGGGTCTGGTGGTGTTGTTTCATCTACGTATCCCCGTCCATATGTTATGAGTCTTCCAGGTGGTACAAGTAATGTGATTCCTGACAGCAGAAAATGGGGAAGTCAAAGTCTGGATCTTAATTCGGGCCCCGGTGGTACGGATACTGAACGGAGAGATGATAGATTGCCTTCTGGATTGAGGCAAATGTCTGTCCCCAATTCACAGGCCTCGATGGAGGACCACTTGAAGATGTTTCAGATGGCAGGTGCATTGAAAAGAAAAGAACCTGATGGTGGTTGGGGGGAGGGAGCCGAGAGATTCGGTTACACGCAACATTCATGGCAGTAG 4725 0.443 MHGCGRDQSKHNRHMWPVPANATTVAIDPSPSQFKCKDGRKIRAGDCALFKAPRDSPPFIGIIRKLTFDKEESPSLEVNWLYRPADLKLAKGIVLEAAPNEVFYSFHKDETPAASLLHPCKVAFLRKGVELPSGISAFVCRRVYDIENNCLWWLTDKDYLNERQEEVNQLLDKTKLEMHGAVQSGGRSPKPLNGPTSTQSLKSGSDNVQNSSSFGAQGKGKKRERGDQVSDSSKKERLFKVEDGDSGQFRLESMLKSEIAKITDNKGGLVDFEGVERLVQLMQPDSGDKKIDLAGRMMLVDVIALTDRYECLCGFVQHRGLPVLDEWLQEVHKGKIGEGNMPKESDKSVDEFLLALLRALDKLPVNLHALQTCNVGKSVNHLRTHKNYEIQRKARSLVDTWKRRVEAEMNMNDSKSGSNRTMSWPAKSANSESPQVGNRKTGGSSDNVAKSSSVQPSISKNSQSKLSSGEALSKSSSSPGSTKLMTTSAVSNSKDQNSKVLVGAATSDLPLTPIKEERSSSSSQSQNNSISCSSEHAKTIGSSREDSKSSTAVSASGGKIPGGASRTRKSSNGLHVTGVAVGPKEHSSAKNSARNSPSEKVSPTRVPHEKSADQPLTDQGNNQRLILRLPNTGHSPSRGASGGSYEEPGITCSKASSPADRNENQDRRMKTRPECLLTHVSNMMNEACDASEALLGVDEGKGPQTVDERCRANEDGDKVAESSKPASLSSGFVSRSGQTYDLSPMNALVESCVKISEASASVSHGDDGMNLLATVAAGEISRSENASPMVSPERKSPPADELSSGNDFKLKHSGEAAVCSLSQSDGGATAEHPLNIFDSLQIKNDLRHPATTSGDGDTISSSCVERSGDGRSQINSSPTDFLQAEGPCLRPETKEDTSETILPVKKETNADPGDCKLKSRTSFDDDQKVDHMNEETAEDEKMLVPKAVASVKSENESGEKHPELSSGVDNENQISAEKSTGTGILVQKASPVSENCESLYLKKESPTSGNAVMVSRDENADDTKSVVIEPDERRTGQDLSVSDDVNERADTMGRKEAIGQCSGSSVHSDLPTVPREENDAFKASERKLDTNKSEVAGERHACSAAGSDTAVKLDFDLNEGFPVDDVSQGEIARQEDPTTSSAVHVPCPMPFPMTSISGVFHASITVASAAKGPVVPPENPLRIKGELGWKGSAATSAFRPAEPRKNAETPPTTNDIASVDVTSIKQGRAPLDFDLNVADERCFEDVGSCASLEAGPHDRSTGGFDLNKFDETPEIGTFLISKLDIPSLPSKPSLSSGLSNGGSVSRDFDLNNGPGLDEVGSEVPTRSQPMKSTVPFPTAVHGTRANNAEFGNYSAWFPPGNTYSAITVPPLLSGRGEQSYVAGAGAQRIMGPTGSAPFGPEIYRGPVLPSSPAVAYPPTTPFPYPGFPFETNFPLSSNSLSVCSTAFMDSSTVGGLCFPTMPSQPVGSGGVVSSTYPRPYVMSLPGGTSNVIPDSRKWGSQSLDLNSGPGGTDTERRDDRLPSGLRQMSVPNSQASMEDHLKMFQMAGALKRKEPDGGWGEGAERFGYTQHSWQ 1574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g00112 1574 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 274 409 IPR035441 -
Gma19g00112 1574 MobiDBLite consensus disorder prediction 178 237 - -
Gma19g00112 1574 MobiDBLite consensus disorder prediction 588 602 - -
Gma19g00112 1574 MobiDBLite consensus disorder prediction 614 639 - -
Gma19g00112 1574 Pfam TFIIS helical bundle-like domain 356 405 IPR017923 -
Gma19g00112 1574 MobiDBLite consensus disorder prediction 218 237 - -
Gma19g00112 1574 MobiDBLite consensus disorder prediction 1194 1215 - -
Gma19g00112 1574 MobiDBLite consensus disorder prediction 189 217 - -
Gma19g00112 1574 MobiDBLite consensus disorder prediction 408 495 - -
Gma19g00112 1574 MobiDBLite consensus disorder prediction 712 733 - -
Gma19g00112 1574 SMART TFS2_5 328 407 IPR003617 GO:0005634
Gma19g00112 1574 MobiDBLite consensus disorder prediction 1291 1333 - -
Gma19g00112 1574 ProSiteProfiles BAH domain profile. 40 155 IPR001025 GO:0003682
Gma19g00112 1574 MobiDBLite consensus disorder prediction 1553 1574 - -
Gma19g00112 1574 MobiDBLite consensus disorder prediction 1492 1532 - -
Gma19g00112 1574 ProSiteProfiles TFIIS N-terminal domain profile. 322 408 IPR017923 -
Gma19g00112 1574 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 315 419 IPR035441 -
Gma19g00112 1574 Gene3D - 33 254 IPR043151 -
Gma19g00112 1574 MobiDBLite consensus disorder prediction 847 882 - -
Gma19g00112 1574 SMART BAH_4 40 155 IPR001025 GO:0003682
Gma19g00112 1574 MobiDBLite consensus disorder prediction 999 1073 - -
Gma19g00112 1574 MobiDBLite consensus disorder prediction 1291 1307 - -
Gma19g00112 1574 MobiDBLite consensus disorder prediction 999 1014 - -
Gma19g00112 1574 CDD TFIIS_I 330 406 - -
Gma19g00112 1574 MobiDBLite consensus disorder prediction 847 971 - -
Gma19g00112 1574 MobiDBLite consensus disorder prediction 513 556 - -
Gma19g00112 1574 MobiDBLite consensus disorder prediction 509 668 - -
Gma19g00112 1574 Pfam BAH domain 42 147 IPR001025 GO:0003682
Gma19g00112 1574 MobiDBLite consensus disorder prediction 782 808 - -
Gma19g00112 1574 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 1 1574 - -
Gma19g00112 1574 MobiDBLite consensus disorder prediction 411 495 - -
Gma19g00112 1574 MobiDBLite consensus disorder prediction 1017 1054 - -
Gma19g00112 1574 MobiDBLite consensus disorder prediction 1492 1509 - -
Gma19g00112 1574 MobiDBLite consensus disorder prediction 909 942 - -
Gma19g00112 1574 PANTHER BAH DOMAIN-CONTAINING PROTEIN 1 1574 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g00112 Gma-Chr19 1155146 1163332 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Gma19g00112 BAH 9.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g00112 - - gmx:100796021 3053.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g00112 19 1155146 1163332 Gma19g00112 19 1155146 1163332 ECH
Gma13g00531 13 17823111 17829518 Gma19g00112 19 1155146 1163332 GST