Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g00094 ATGGTTGAGAGGAGAGCAAATGGGGGAAGAAGCATGTCTATAGATGACTTGGAGAAGCTTCCATGTTATGATTATGTTGACAATTCCAAAGGCAACAACACAAGCAGCCCTGTGGATTGTGCAGTTTGCTTGGAGAACCTAATCACAGGAGATAAGTGCAGATTCTTACCTGTGTGCAAGCATAGTTTTCATGCCCAATGTGTGGACGCATGGCTTCTAAAGACACCCATTTGTCCAACTTGCAGGTGTAATGCTCATTCTCATAGTGGAAACCAAGTTGTAGTTGAGAGAAAGCCAAGAAAATGTTCCATCCAGAAATGTTGA 324 0.429 MVERRANGGRSMSIDDLEKLPCYDYVDNSKGNNTSSPVDCAVCLENLITGDKCRFLPVCKHSFHAQCVDAWLLKTPICPTCRCNAHSHSGNQVVVERKPRKCSIQKC 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g00094 107 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 9 99 - -
Gma19g00094 107 ProSiteProfiles Zinc finger RING-type profile. 40 82 IPR001841 -
Gma19g00094 107 SMART ring_2 40 81 IPR001841 -
Gma19g00094 107 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 88 IPR013083 -
Gma19g00094 107 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 9 99 - -
Gma19g00094 107 SUPERFAMILY RING/U-box 24 88 - -
Gma19g00094 107 Pfam Ring finger domain 39 82 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g00094 Gma-Chr19 994760 995169 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g00094 17 84 C3H Transcription Factor Family AT2G18650 45.588 3.62e-14 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g00094 - K15692 gsj:114400372 207.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g00094 19 994760 995169 Gma19g00094 19 994760 995169 ECH