Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g00058 ATGAAATGTCATCATGCTTCCACTTGCTTTTACAAACATTTATGGGAGGAAATTGCAAAAACTATGTCTGAGAATGATGATACCTTACGGTCTTTGGTGAAAATGGGCTACAAACAAGAGGAAGCTTTAGTTGCCATAGAAAGATTAGGCCCAAATGCCTCACTTGAAGAATTGGTAGATTTTATAGGTGTTGCTCAAATGGCAAAGGCTGAGGATGCTCTTCTGCCTCCTGAAGAAAAGTTACAATACAATGACTATGCTAAGTCCAATAAACGAAGATTTTATGATTATGAAGTGCTGGGAAGGAAAAAGCCTAGGGGATGTGAGAAGAAAATCCTCAATGAAGATGATGATGAGGAAGATGAAGCTCTTCATCTTCCAAACCCAATGATTGGGTTTGGTGTACCTACAGAGTCGAGCTTCATAACACACAGAAGGATTCCAGAAGATGCCATTGGGCCTCCTTACTTCTATTATGAGAATGTAGCCTTAGCACCGAAAGGTGTTTGGCAAACAATTTCAAGATTCTTGTATGATGTTCAACCCGAGTTTGTAGATTCAAAGTTTTTCTGTGCTGCAGCCAGGAAAAGGGGATATATTCACAATCTCCCCATCCAAAATAGGTTCCCACTTCTACCACTTCCACCGCGCACAATACACGAGGCTTTTCCCCTAACAAAGAAGTGGTGGCCTTCATGGGATACTAGGACCAAGCTTAATTGTTTGCAAACATGTATTGGCAGTGCAAAACTAACAGAAAGAATTAGGAAAGCTGTAGAAATCTATGATGAAGATCCACCTGAAAGTGTACAGAAGTTTGTTCTTCATCAGTGTAGGAAATGGAATTTGGTTTGGGTGGGAAGGAATAAGGTTGCTCCATTAGAGCCTGATGAAGTAGAAACGCTGCTGGGCTTCCCAAGGAACCACACCAGAGGAGGTGGAATAAGTAGGACTGACAGATACAAGTCACTTGGTAATTCATTCCAGGTTGACACTGTGGCATACCACTTGTCAGTTCTGAAGGAGATGTATCCTAATGGTATCAATCTTCTTTCTCTCTTTTCTGGAATTGGTGGGGCAGAGGTAGCTCTTCATCGGCTCGGCATCCCTCTCAAGAATGTTGTGTCTGTTGAAAAATCAGAAGTGAATAGGAATATTGTTAGAAGTTGGTGGGAGCAAACAAATCAGAAAGGTAATCTATATGACATTGACGATGTAAGGGAGCTAGACGGTGATCGCTTGGAGCAGCTGATGAGCACATTTGGTGGTTTTGATCTAATTGTTGGTGGCAGTCCATGTAATAATCTGGCTGGTAGCAACAGGGTCAGCCGGGATGGACTGGAGGGAAAAGAATCTTCTCTCTTCTTTGATTACTTTAGGATTCTAGACTTAAGAGAGAGAGAGAGAGGGAGAGAGAGAAACACTGACCTAGCTCGCAGAATCGACAACCACTTCTCACTCTTCAATCGAATTGTATTGCTGGTTTCCTTGCTAATGGCTGCCACAGCAACTGTGTCTTTGATGGGTCCGAGGTATGCACCACCAGACCCAACACTCCCTAAACCATGGCGGGGTCTTGTGGATGGCAAGACTGGGTATCTTTACTTTTGGAATCCTGAGACTAATGTCACCCAGTATGAGAGGCCATCCTCAAGCTCAGCTTCCCAGTCAAAGTTTTCTTCAGTGCCCAGCTCTTCTGTCCAGGTTCAACAATCATCTCAAGGGTCGCAACGTGGTCGTAGTCCTGATTTCAGTGATAGGTATGATCGAAATGGCACTGGTGGGTCAAACGACGCTGGATCCCGGAACAATCAGAGTTCCAAAGGGGGAAGTTATACTTCTCATGATGTTTCAAATGGAACAAATGTTGCTGGCAATGGTAATTCTTCTGTCAGAGGTCATGGGGCTTCAGATGCTGGAGCTGGACTATCTGCTGAGTCTTATCGACATCGGCATGAAATATCTGTGACTGGAGACAATGTGCCTCCACCGCTTGCATCATTTGGGTCAACTGGCTTTCCATCTGAGCTTCTGAGAGAGGTACAAAATGCTGGGTTCTCAGCCCCAACTCCAATTCAGGCACAGTCATGGCCCATTGCTCTTCAAGGTAGAGATATAGTTGCCATTGCTAAAACAGGCTCAGGGAAAACCTTGGGATATTTAATTCCAGCATTTATTCACCTCAAGCGCTCTGGTAATAACTCCAAAATGGGCCCCACTGCATTGGTACTTTCACCAACAAGGGAGTTGGCAACACAGATACAAGATGAAGCCATGAAGTTTGGGAAATCATCTAGAATTTCATGTGCATGTTTGTATGGAGGAGCACCAAAGGGTCCTCAACTGAGAGACATTGATCGTGGAGCAGATATTGTGGTAGCCACTCCTGGTCGCTTGAATGATATTCTTGAGATGAGAAGAATTAGTCTTAATCAGGTTTCTTACCTGGTGCTAGATGAGGCAGACAGGATGCTGGATATGGGTTTTGAACCTCAAATTAGGAAAATTGTGAATGAGGTGCCCAATCGCAGGCAAACTCTAATGTTTACTGCAACATGGCCAAAGGAGGTTAGGAAAATTGCAGCTGATCTGCTAGTCAAGCCTGTCCAGGTGAACATTGGGAATGTAGATGAGCTTGTTGCTAACAAGTCTATTACTCAGCATGTTGAAGTATTGCCACCAATGGAGAAACAAAGACGGCTGGAACATATTTTGCGGTCACAGGATCAAGGATCAAAGATAATTATTTTTTGTTCTACCAAGAAAATGTGTGATCAACTTGCTCGTAATCTGACACGTCATTTCGGAGCTGCTGCTATTCATGGGGATAAATCCCAGGCTGAGAGGGATCATGTGTTGAGTCAGTTTCGAACTGGGAGGTCTCCTGTGCTAGTGGCCACAGATGTTGCTGCTCGGGGACTGGATATCAAGGACATTAGGTTGGTGGTTGTCAATTATGACTTCCCTACAGGAGTGGAAGATTATGTTCATAGGATTGGAAGGACTGGAAGAGCTGGAGCCACTGGGCTAGCTTACACTTTCTTTGGTGACCAGGATGCTAAATATGCTTCAGATCTCATCAAAGTCTTGGAAGGTGCAAACCAGAAGGTACCTCCAGAACTTCGTGATATGTCATCACGGAGTGGTGGTGGGATGGGTAGATCCAGACGATGGGGTTCTGGGGGACGAGGTGGACATGGTGATtctggatatggtggaaggaataatgactctggatatggtggaagaggtaatgatgcaggatatggtggaagaggCAGTGATTCTAATTATGGAGGGAGGGGGACTGCTGCTTCTGGCAGAGGTGGAGGCCGTGGGTTTGACCATGACTCCCAGAGGAATGATAGGGGTCGGAGCCCAGACAAGGGATCTAGTTGGAGTGATCGCTTCAAAAGCGTCAACCGGGATCGCAGTCGTAGTCCTGACAGGGCTGCACTACCTCAACATTCCCAAGGTGGCAGCTTTCACAAGGCAATGATGGAACGTGGTGGTGGTGGTGGTGATCGCAATAAGAGCTTTAACCGGGACCGAAGCCGCAGTCCTAGCCCTCATAGACAGGAGAAGTGCCCAGCGGTTCGAGATCGTTCCCCAGTTTACAGTTTTCATCAATCAATGATGGGACGAGGTCAGTCATCCCCTTCATCTCAACGGCAGCGTGCACGCAGTCCTCACCGAAACTCACCCCCCTCCCAGGGTGATGGAAGATATGCTGGATCTCATTCATCTTACAATGGAGAAGTGGAGGAAGGGATGATTCCCGAGGAAGAAGGAATGATTGGTCAAGATGATCCC 3813 0.4485 MKCHHASTCFYKHLWEEIAKTMSENDDTLRSLVKMGYKQEEALVAIERLGPNASLEELVDFIGVAQMAKAEDALLPPEEKLQYNDYAKSNKRRFYDYEVLGRKKPRGCEKKILNEDDDEEDEALHLPNPMIGFGVPTESSFITHRRIPEDAIGPPYFYYENVALAPKGVWQTISRFLYDVQPEFVDSKFFCAAARKRGYIHNLPIQNRFPLLPLPPRTIHEAFPLTKKWWPSWDTRTKLNCLQTCIGSAKLTERIRKAVEIYDEDPPESVQKFVLHQCRKWNLVWVGRNKVAPLEPDEVETLLGFPRNHTRGGGISRTDRYKSLGNSFQVDTVAYHLSVLKEMYPNGINLLSLFSGIGGAEVALHRLGIPLKNVVSVEKSEVNRNIVRSWWEQTNQKGNLYDIDDVRELDGDRLEQLMSTFGGFDLIVGGSPCNNLAGSNRVSRDGLEGKESSLFFDYFRILDLRERERGRERNTDLARRIDNHFSLFNRIVLLVSLLMAATATVSLMGPRYAPPDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPSSSSASQSKFSSVPSSSVQVQQSSQGSQRGRSPDFSDRYDRNGTGGSNDAGSRNNQSSKGGSYTSHDVSNGTNVAGNGNSSVRGHGASDAGAGLSAESYRHRHEISVTGDNVPPPLASFGSTGFPSELLREVQNAGFSAPTPIQAQSWPIALQGRDIVAIAKTGSGKTLGYLIPAFIHLKRSGNNSKMGPTALVLSPTRELATQIQDEAMKFGKSSRISCACLYGGAPKGPQLRDIDRGADIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVNEVPNRRQTLMFTATWPKEVRKIAADLLVKPVQVNIGNVDELVANKSITQHVEVLPPMEKQRRLEHILRSQDQGSKIIIFCSTKKMCDQLARNLTRHFGAAAIHGDKSQAERDHVLSQFRTGRSPVLVATDVAARGLDIKDIRLVVVNYDFPTGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKYASDLIKVLEGANQKVPPELRDMSSRSGGGMGRSRRWGSGGRGGHGDSGYGGRNNDSGYGGRGNDAGYGGRGSDSNYGGRGTAASGRGGGRGFDHDSQRNDRGRSPDKGSSWSDRFKSVNRDRSRSPDRAALPQHSQGGSFHKAMMERGGGGGDRNKSFNRDRSRSPSPHRQEKCPAVRDRSPVYSFHQSMMGRGQSSPSSQRQRARSPHRNSPPSQGDGRYAGSHSSYNGEVEEGMIPEEEGMIGQDDP 1271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g00058 1271 Pfam DEAD/DEAH box helicase 690 860 IPR011545 GO:0003676|GO:0005524
Gma19g00058 1271 Gene3D - 876 1048 IPR027417 -
Gma19g00058 1271 MobiDBLite consensus disorder prediction 1256 1271 - -
Gma19g00058 1271 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 23 65 IPR015940 -
Gma19g00058 1271 ProSiteProfiles SAM-dependent methyltransferase DRM-type domain profile. 143 472 IPR030380 GO:0006306
Gma19g00058 1271 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 697 871 IPR014001 -
Gma19g00058 1271 MobiDBLite consensus disorder prediction 545 581 - -
Gma19g00058 1271 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 817 825 IPR000629 -
Gma19g00058 1271 Gene3D - 642 875 IPR027417 -
Gma19g00058 1271 SMART ww_5 518 551 IPR001202 GO:0005515
Gma19g00058 1271 MobiDBLite consensus disorder prediction 1037 1271 - -
Gma19g00058 1271 SUPERFAMILY WW domain 509 550 IPR036020 GO:0005515
Gma19g00058 1271 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 810 1019 IPR027417 -
Gma19g00058 1271 Pfam Helicase conserved C-terminal domain 897 1006 IPR001650 -
Gma19g00058 1271 MobiDBLite consensus disorder prediction 590 633 - -
Gma19g00058 1271 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 622 1138 - -
Gma19g00058 1271 ProSitePatterns WW/rsp5/WWP domain signature. 523 549 IPR001202 GO:0005515
Gma19g00058 1271 Pfam C-5 cytosine-specific DNA methylase 349 463 IPR001525 GO:0008168
Gma19g00058 1271 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 143 341 IPR029063 -
Gma19g00058 1271 MobiDBLite consensus disorder prediction 1169 1199 - -
Gma19g00058 1271 Gene3D - 515 565 - -
Gma19g00058 1271 SMART ultradead3 685 888 IPR014001 -
Gma19g00058 1271 SMART helicmild6 925 1006 IPR001650 -
Gma19g00058 1271 CDD WW 520 549 IPR001202 GO:0005515
Gma19g00058 1271 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 40 622 1138 - -
Gma19g00058 1271 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 348 464 IPR029063 -
Gma19g00058 1271 MobiDBLite consensus disorder prediction 545 643 - -
Gma19g00058 1271 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 900 1045 IPR001650 -
Gma19g00058 1271 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 666 694 IPR014014 GO:0003724
Gma19g00058 1271 MobiDBLite consensus disorder prediction 1210 1245 - -
Gma19g00058 1271 MobiDBLite consensus disorder prediction 1113 1150 - -
Gma19g00058 1271 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 649 873 IPR027417 -
Gma19g00058 1271 Gene3D Vaccinia Virus protein VP39 141 224 IPR029063 -
Gma19g00058 1271 Gene3D Vaccinia Virus protein VP39 338 483 IPR029063 -
Gma19g00058 1271 ProSiteProfiles WW/rsp5/WWP domain profile. 517 551 IPR001202 GO:0005515
Gma19g00058 1271 CDD SF2_C_DEAD 885 1015 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g00058 Gma-Chr19 551470 563464 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g00058 664 1044 Eukaryotic Initiation Factors Gene Family AT3G19760 34.115 1.40e-64 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g00058 K12823 - gmx:100816455 1380.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g00058 19 551470 563464 Gma19g00058 19 551470 563464 ECH