Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g00048 ATGGCCTCTTCTAGCTACTCCAATTCTCCATGTGCAGCCTGCAAGTTTTTGAGAAGGAAGTGCATGCCAGATTGCATTTTTGCCCCATATTTCCCACCAGAAGAGCCACATAAGTTTGCAAATGTTCACAAGATATTTGGTGCAAGCAACGTTAGCAAACTCCTCAACGAGGTTCAACCCCATCAAAGAGAGGATGCTGTGAACTCTCTGGCCTATGAAGCCGAAGCAAGGATCAAGGATCCAGTGTATGGTTGTGTTGGGGCCATTTCAGTGCTCCAAAAACAAGTCCTTAGGCTCCAAAAGGAACTTGATGCCACAAACGCTGATTTGATCCGCTATAGTGCTTGCAATGAAATGCCAAATCTTGGAGGGAGATCAAGGATGTGTAGTGATGATGGAGGAGGTGGTGGTTCCTCATCACTTGCTCACTCCCATGGTTTCTATTATCCTAATTGGAACAATGATCCTTGTGGAAATAATAATGGCTACCCCAGAGGGGATATATAA 507 0.4497 MASSSYSNSPCAACKFLRRKCMPDCIFAPYFPPEEPHKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARIKDPVYGCVGAISVLQKQVLRLQKELDATNADLIRYSACNEMPNLGGRSRMCSDDGGGGGSSSLAHSHGFYYPNWNNDPCGNNNGYPRGDI 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g00048 168 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 156 - -
Gma19g00048 168 Coils Coil 89 109 - -
Gma19g00048 168 Pfam Lateral organ boundaries (LOB) domain 10 106 IPR004883 -
Gma19g00048 168 PANTHER LOB DOMAIN-CONTAINING PROTEIN 25 1 156 - -
Gma19g00048 168 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g00048 Gma-Chr19 436442 438485 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g00048 4 126 AS2 family AT3G27650 79.675 9.62e-71 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gma19g00048 LOB 9.8e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g00048 - - gmx:100820187 312.768