LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma18g02563	ATGGCTACCACTCCTGCCAGATCTTTCCTCCAAGTCGCCGCAACGGAGGAGGCTGCGCCGCCTCTCAGAGTCGTCCAGATTGAAGGACTGGTTATCCTGAAGATAATTAAGCATTGTAAGGACCACTCGCCTTCTTTAGTCACTGGACAACTTCTTGGGTTGGATGTTGGCAGTGTTCTTGAAGTTACCAACTGCTTCCCCTTTCCAATGAGGGAGGAGGATGAGGAAATTGAAGCTGATGGTGCCAATTATCAGCTTGAAATGATGAGATGCCTGAGGGAGGTTAATGTTGACAACAACACAGTTGGATGGTACCAGTCTACATTGCTTGGCTCCTTCCAGACTGTGGAGCTTATTGAAACCTTTATGAATTACCAGGAGAATATTAGACGCTGTGTTTGCATAATATATGATCCATCAAGGTCTGATCAAGGTGTTCTAGCTCTGAAGGCATTGAAGCTTTCTGACTCATTCATGGAACTCTATCGCAGCAATAATTTTACTGGAGAGAAATTGAGGGAGAAGAACTTATCATGGGTGGATATCTTTGAGGAAATACCAATCAAAGTTTCAAATTCTGCCCTTATCAGTGCTTTTATGACAGAGCTGGAACCTGATACTCCAGTCACCCAGTGTGATTATGATCGTTTGCAATTGTCAACCAGTTCATTGATGGAGAGGAATACTGAATTTTTGATTGAATGCATGGATGACTTGTCACTAGAACAACAAAAGTTCCAATTCTATTATCGAAGCTTGTCTCGTCAACAAGCTCAGCAGCAAGCATGGCTTCAAAAGAGAAGGACGGAGAACATGGCTCGTAAAGCTGCTGGAGAAGAACCTTTGCCAGAGGAAGATCCTTCAAATCCCATTTTCAAGCCGCTCCCAGAGCCTTCACGGTTGGAGAGCTTCCTCATAACAAATCAAATTTCCAACTACTGCAACCAAATCAATGGGGTGTCAGGGCAGAGCTTTAACAGACTCTATTTGATGAAGGCTTTGCATGAGGATTGA	1014	0.4389	MATTPARSFLQVAATEEAAPPLRVVQIEGLVILKIIKHCKDHSPSLVTGQLLGLDVGSVLEVTNCFPFPMREEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTLLGSFQTVELIETFMNYQENIRRCVCIIYDPSRSDQGVLALKALKLSDSFMELYRSNNFTGEKLREKNLSWVDIFEEIPIKVSNSALISAFMTELEPDTPVTQCDYDRLQLSTSSLMERNTEFLIECMDDLSLEQQKFQFYYRSLSRQQAQQQAWLQKRRTENMARKAAGEEPLPEEDPSNPIFKPLPEPSRLESFLITNQISNYCNQINGVSGQSFNRLYLMKALHED	337

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma18g02563	337	PANTHER	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED	4	336	-	-
	Gma18g02563	337	Hamap	Eukaryotic translation initiation factor 3 subunit H [EIF3H].	20	337	IPR027524	GO:0003743\|GO:0005737\|GO:0005852
	Gma18g02563	337	SMART	pad1_6	24	157	IPR000555	GO:0005515\|GO:0008233\|GO:0008237
	Gma18g02563	337	MobiDBLite	consensus disorder prediction	268	282	-	-
	Gma18g02563	337	CDD	MPN_eIF3h	23	286	IPR027524	GO:0003743\|GO:0005737\|GO:0005852
	Gma18g02563	337	ProSiteProfiles	MPN domain profile.	25	158	IPR037518	-
	Gma18g02563	337	MobiDBLite	consensus disorder prediction	267	294	-	-
	Gma18g02563	337	Pfam	C-terminal region of eIF3h	144	336	IPR045810	-
	Gma18g02563	337	Pfam	JAB1/Mov34/MPN/PAD-1 ubiquitin protease	23	126	IPR000555	GO:0005515\|GO:0008233\|GO:0008237
	Gma18g02563	337	Gene3D	Cytidine Deaminase, domain 2	3	213	-	-
	Gma18g02563	337	PANTHER	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT H	4	336	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma18g02563	Gma-Chr18	59795940	59799569	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma18g02563	88	337	Eukaryotic Initiation Factors Gene Family	AT1G10840	84.800	1.28e-158	442

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma18g02563	K03247		-	gmx:100814297	654.825