Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g02553 ATGACAGCAGCGTTCCAAGAAGGCGGCGGCGGCGGTGGCGGTGGTGGTGACGATGACGCCACCATCGACGTGCATACCACGCGCGGCACTCCCATCCGCTACCTTCCCCTCGACCACCTCTACTCCGCCACCTCTCCCTGCCGCGTCACCGCCAGCGGCTCCTCCAACGTCATGTCGAAGAAAATCAAAGCTCGCAAACTCACCCTAACGCATAACAACCATTTTAACAACCACGACCAGAAGAAAACGGCGCCATCTTCTTCTTCGTCCCTGACCCTTCCTCCCAAGCCCCCTCTCCTCTTCGTCTACTCGCGGCGCCGGCGCAAGAGGCATTCCCCTTCCGCGACGGCGTCGTTTGCCGACGGCGCGGAGAACGACGAGAGCGAGAGGAGGTTGCTGAAGAAGAGGAAAATTGGGAGCACTGAGTTGGAGAGGCTGGGTGTGGATTTGAATACTGCGATTGGGGATGTTGACGGGCCCAGATTGAGGGAATGCAGAAATCAATTTGGGAATTCCGGTGCTGCTGGGAATGCTAAGTGTGGTTCCTTGGAGAATTTGCCCAAAATGTTGCCCGAATCTCGCAATGTGAAGAAATGGGTCGGGTTGACTTTTGATAATGCTGATCCTGAGGCGTTTGTTGGATTACGATGCAAGGTTTACTGGCCCATGGATTTAAAAGCATACATTGGCTATGTCAGAAGTTATGATAAGGAAACTAAGATACATCATGTCAAGTATGATGATGGTGATGAGGAAAGTTTAATTCTTGCAAATGAAAATATAAGATTCCATGTTTCCCGCGATGAGATGAAACATTTAAAATTGAATTTTGCCAAAGTTCGTGACAATAATGTCTCTGATTATGATGTTGAAGAGATGCTTGCATTGGCTGCTAGTTTGGATGATTGTCAAGACTTTGAGCCTGGGGATATCATATGGGCCAAGCTAACAGGCCATGCAATGTGGCCAGCTGTTGTTCTGGATGAATCACTTGCTAGCAACTGTAAGGGTTTAAAGATGTTTTTGGGAGGAAGATCAGTTCCTGTCCAATTTTTTGGCACCCATGACTTTGCAAGGGTTAGACTGCAACAGGTGAAATCATTTCTCAGTGGACTTCTTACTGATCTACACTCAAAATGCAAGAAACATAGTTTTATTGAAGGTTTAGAAGAGGCAAAAAGATATTTAAGTGAACAGAAGCTTCCATCAGAGATGCTAGAGTTGCGGAAAAGATGTACAGCTGATGACTGTAACAACATAAGTGGAGAGGATGGAGGATGTACAGATTCAGGTGATGATTGTTTAAATGACAATGGGACTTTGACGGCTCTGGAAACCATTGAAACTTTTCCATATGAAGTAGGAGACCTCCAAATTCTAAGCCTTGGAAAAATAGTTGAAGATTCTGCTTTCCGGGATGGAAGATTCATCTGGCCTGAAGGGTACACAGCAGTGAGGAAGTTTACTTCAGTTACTGACCCTAAAGTTTCTGCACCTTATAAGATGGAGGTGTTGAGAGATCCAGAATCCAAAGTTCGTCCTCTGTTTAGAGTGACAGTTGAAGGTGGTGAGCAGTTCAATGGTTATACACCATCTGCTTGCTGGAATGAGGTATACGAAAAGATAAAGAAAATGGAAAAGGATGCTTCTGAAGGTACTGTTGCTGGTGGGGAAGAAAAGAGCTACGAATCTGGGTCTGATATGTTTGGTTTCTCCAATCCTATAGTACTTAAACTTATACGGGGATTGTCTAAATCCAAAATCTCTTCAAAGAACTCAACTTGCAAGTTAGGTTCCAGAAGATATAATAATAACTTGCCTCTTGGTTATAGACAAGTTCATATCAATTGGTTTGACCTCGATAAGTGCAATGTGTGCCACATGGATGAGGAGTATGAAAACAATCTGTTTCTGCAGTGTGACAAATGCAGAATGATGGTCCATGCTAGATGCTATGGGGAACTTGAACCTGTTAATGGGGTGCTATGGTTATGTAACTTATGTCGTTCGGGTGCTCCTCCTCCACCTTGCTGCTTATGTCCACTCATAGGTGGTGCAATGAAGCCTACTACAGATGGCCGGTGGGCTCATTTGGCTTGTGCCATGTGGATACCTGAAACTTGCTTAGCTGATGTAAAGAGAATGGAGCCTATTGATGGTTTGAGTAGAATCAGTAAGGACCGCTGGAAGTTGTTATGCAGCATATGCGGTGTATCTTATGGTGCCTGCATCCAATGTTCAAATAATTCTTGTCGAGTAGCATACCATCCACTCTGTGCACGTGCTGCTGGTCTCTGTGTTGAGCTTGAGAATGAGGACAGACTGTATCTCCTTTCTGTTGATGATGATGAAGATCAGTGCATACGCTTGCTTTCTTTCTGCAAGAAACATAGGCAACCATCTAATGAGCCTTCTGTTGCTGATGAACGTATGGTCCGAGTTGCTGGTCTATGTTCAGACTATGAACCACCGCCCAATCTGTCTGGTTGTGCTCGAAGTGAGCCATATGATTACTTTGGCAGGAGAGGTCGAAAAGAACCTGAAGCACTTGCAGCTGCATCGTTGAAACGTTTGTTTGTGGAGAATCAACCTTACTTAGTAGGTGGATACTGTCAGCATGGTTCACTAAACAACCTAGAGCCTTCTGGCAGAGGAGTCTGCTCTAAATTCTTTTGTAGCCAACAAAGGCTGAGAACCTCTCTGGTTGACACATCAAACAGCATACTTTCTATCTCTGAAAAATATACGTACATGAGGGAAACCTTTCGGAAACGACTGGCATTTGGGAAATCAAGAATTCATGGATTTGGCATCTTTGCAAAGCATGCATATAAAGGTGGAGACATGGTGATTGAATACACTGGTGAACTTGTTAGACCACCTATAGCTGACCGGAGAGAGCACTTCATATACAATTCGTTGGTGGGTGCTGGAACATATATGTTTCGTATTGATGATGAACGAGTCATTGATGCTACTAGAGCAGGAAGCATTGCTCATTTGATTAATCATTCTTGTGCACCAAATTGCTATTCCAGAGTTATAAGTGTTAATGGCGATGAACATATTATAATATTTGCGAAGAGGGACATTAAACAGTGGGAAGAGCTTACATATGATTACAGATTTTTCTCAATTGATGAACGACTTGCTTGTTACTGTGGCTTCCCAAAGTGCCGAGGTATTGTAAATGATACTGAGGCAGAAGAACGAGCAGCTACCCTATATGCACCACGAAGCGAATTAATAGATTGGAGAGGAGAATGA 3267 0.4438 MTAAFQEGGGGGGGGGDDDATIDVHTTRGTPIRYLPLDHLYSATSPCRVTASGSSNVMSKKIKARKLTLTHNNHFNNHDQKKTAPSSSSSLTLPPKPPLLFVYSRRRRKRHSPSATASFADGAENDESERRLLKKRKIGSTELERLGVDLNTAIGDVDGPRLRECRNQFGNSGAAGNAKCGSLENLPKMLPESRNVKKWVGLTFDNADPEAFVGLRCKVYWPMDLKAYIGYVRSYDKETKIHHVKYDDGDEESLILANENIRFHVSRDEMKHLKLNFAKVRDNNVSDYDVEEMLALAASLDDCQDFEPGDIIWAKLTGHAMWPAVVLDESLASNCKGLKMFLGGRSVPVQFFGTHDFARVRLQQVKSFLSGLLTDLHSKCKKHSFIEGLEEAKRYLSEQKLPSEMLELRKRCTADDCNNISGEDGGCTDSGDDCLNDNGTLTALETIETFPYEVGDLQILSLGKIVEDSAFRDGRFIWPEGYTAVRKFTSVTDPKVSAPYKMEVLRDPESKVRPLFRVTVEGGEQFNGYTPSACWNEVYEKIKKMEKDASEGTVAGGEEKSYESGSDMFGFSNPIVLKLIRGLSKSKISSKNSTCKLGSRRYNNNLPLGYRQVHINWFDLDKCNVCHMDEEYENNLFLQCDKCRMMVHARCYGELEPVNGVLWLCNLCRSGAPPPPCCLCPLIGGAMKPTTDGRWAHLACAMWIPETCLADVKRMEPIDGLSRISKDRWKLLCSICGVSYGACIQCSNNSCRVAYHPLCARAAGLCVELENEDRLYLLSVDDDEDQCIRLLSFCKKHRQPSNEPSVADERMVRVAGLCSDYEPPPNLSGCARSEPYDYFGRRGRKEPEALAAASLKRLFVENQPYLVGGYCQHGSLNNLEPSGRGVCSKFFCSQQRLRTSLVDTSNSILSISEKYTYMRETFRKRLAFGKSRIHGFGIFAKHAYKGGDMVIEYTGELVRPPIADRREHFIYNSLVGAGTYMFRIDDERVIDATRAGSIAHLINHSCAPNCYSRVISVNGDEHIIIFAKRDIKQWEELTYDYRFFSIDERLACYCGFPKCRGIVNDTEAEERAATLYAPRSELIDWRGE 1088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g02553 1088 CDD PHD_ATX1_2_like 622 668 IPR042010 -
Gma18g02553 1088 Gene3D SET domain 876 1076 IPR046341 -
Gma18g02553 1088 Pfam PWWP domain 309 396 IPR000313 -
Gma18g02553 1088 ProSiteProfiles Extended PHD (ePHD) domain profile. 674 798 IPR034732 -
Gma18g02553 1088 SUPERFAMILY FYVE/PHD zinc finger 614 684 IPR011011 -
Gma18g02553 1088 SUPERFAMILY Tudor/PWWP/MBT 302 401 - -
Gma18g02553 1088 ProSitePatterns Zinc finger PHD-type signature. 623 668 IPR019786 -
Gma18g02553 1088 ProSiteProfiles Zinc finger PHD-type profile. 620 671 IPR019787 -
Gma18g02553 1088 Pfam SET domain 935 1041 IPR001214 GO:0005515
Gma18g02553 1088 Pfam PHD-finger 635 669 - -
Gma18g02553 1088 ProSiteProfiles Post-SET domain profile. 1048 1064 IPR003616 -
Gma18g02553 1088 MobiDBLite consensus disorder prediction 1 21 - -
Gma18g02553 1088 ProSiteProfiles PWWP domain profile. 308 371 IPR000313 -
Gma18g02553 1088 Gene3D - 296 407 - -
Gma18g02553 1088 Pfam PHD-zinc-finger like domain 676 797 - -
Gma18g02553 1088 MobiDBLite consensus disorder prediction 71 94 - -
Gma18g02553 1088 CDD ePHD_ATX1_2_like 683 797 IPR041956 -
Gma18g02553 1088 Pfam F/Y-rich N-terminus 455 504 IPR003888 GO:0005634
Gma18g02553 1088 ProSiteProfiles SET domain profile. 924 1042 IPR001214 GO:0005515
Gma18g02553 1088 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATX2 23 1085 - -
Gma18g02553 1088 MobiDBLite consensus disorder prediction 71 129 - -
Gma18g02553 1088 PANTHER PHD FINGER PROTEINS 23 1085 - -
Gma18g02553 1088 SMART fyrn_3 463 507 IPR003888 GO:0005634
Gma18g02553 1088 Pfam F/Y rich C-terminus 513 585 IPR003889 GO:0005634
Gma18g02553 1088 ProSiteProfiles FYR domain FYRC motif profile. 511 596 IPR003889 GO:0005634
Gma18g02553 1088 SMART PHD_3 732 798 IPR001965 -
Gma18g02553 1088 SMART PHD_3 622 669 IPR001965 -
Gma18g02553 1088 Gene3D - 450 588 - -
Gma18g02553 1088 Gene3D - 210 265 - -
Gma18g02553 1088 CDD SET_SETD1-like 912 1060 - -
Gma18g02553 1088 SUPERFAMILY SET domain 921 1061 IPR046341 -
Gma18g02553 1088 ProSiteProfiles FYR domain FYRN motif profile. 449 507 IPR003888 GO:0005634
Gma18g02553 1088 SMART PWWP_4 306 369 IPR000313 -
Gma18g02553 1088 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 669 800 IPR013083 -
Gma18g02553 1088 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 614 668 IPR013083 -
Gma18g02553 1088 SMART fyrc_3 515 603 IPR003889 GO:0005634
Gma18g02553 1088 SMART set_7 924 1048 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g02553 Gma-Chr18 59650373 59663403 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g02553 623 768 C2H2 Transcription Factor Family AT3G14740 39.735 6.97e-27 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gma18g02553 zf-HC5HC2H_2 3.1e-33 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g02553 - - gmx:100808923 2214.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g02553 18 59650373 59663403 Gma08g02407 08 23835581 23852509 GST