Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g02548 ATGTGTTCTCTACTTTGGAGTTCCATTGCATTGTGTGTAGCACTCCTACTCCTTCAGCTTGGCATTGTGCACCCTTCACCCTCTCACCATAGGATCACTCGCTTACCGGGTCAACCCCATGTTCAGTTTCATCAGTTTTCAGGTTATGTAACCGTTGATGACAAAAACCAGCGTGCACTCTTCTTCTACTTTGCTGAAGCTGAAAAAGATGCACTTTCCAAACCCCTTGTTCTTTGGCTCAATGGAGGGCCCGGTTGTTCTTCTCTTGGAGTTGGTGCATTTTCAGAGAATGGACCATTTAGACCCAAAGGAGAGGGCTTGGTTAGAAACCAATTCAGCTGGAACAAAGAAGCGAATATGCTGTATTTGGAAACGCCAATTGGAGTTGGATTCTCTTACTCAACTGATACTTCCTCTTACGAGGGTGTGAATGATAAAATTACAGGCAAGTTTTTAATGTTCACACCTCTATTTGACATTACCAACTTTTTACTTTTTACCGGGGATAACTTGGTGTTCTTGCAAAACTGGTTTATGAAGTTCCCAGAATACAGAAACCGAAGTTTGTTCATTGTAGGAGAAAGCTATGCAGGCCATTATGTTCCTCAGCTGGCTGAGCTTATGCTCCGATTCAACAGAAAGGAGAAGTTGTTCAATTTAAAAGGCATTGCTCTTGGTAATCCAGTTCTAGAATTTGCAACAGATTTCAATTCGAGAGCTGAGTTCTTCTGGTCACATGGATTAATTTCAGATACAACGTACAAGATGTTCACTTCTGTTTGTAACTATTCAACATATGTGAGGGAATACTATAATGGTGCTGTTTCTCCTATCTGTTCAAGTGTTATGAGCCAAGTTAGTACGGAAACAAGTAGATTTGTCGACAAATATGATGTGACCCTTGATGTTTGTTTGTCTTCAGTGTTCTCACAAACCAAAGTCCTCAATCCCCAGCAAGTCACAGAAACCATAGATGTatgtgtggaagatgaaacagtgaattatctgaacaggaaagatgtgcagtcagctttgcatgctcatcttgttggagtccaaagatggtctgcatgcagcaaTGTCCTGGATTATGAGCTGCGTGACTTGGAGATACCAACAATCACGGTTGTGGGGAAGCTAGTCAAGGAGGGAATACCAGTATTGGTTTACAGTGGTGATCAGGACTCAGTTATCCCACTGACTGGAAGTAGAACATTAGTACATAAATTGGCAAAAGAACTAGGATTGAACACCACTGTGCCATACAGGGTGTGGTTTGAGAAGCAGCAGGTGGGTGGGTGGACTCAAGTTTATGGTAACATCCTTTCATTTGCCACCATCAGGGGAGCATCCCATGAAGCTCCATTTTCACAGCCCGAGAGATCACTTGTGCTGTTCAAGTCCTTCTTAGAAGGAGGACCTCTACCACAAGAGATTTGA 1440 0.3958 MCSLLWSSIALCVALLLLQLGIVHPSPSHHRITRLPGQPHVQFHQFSGYVTVDDKNQRALFFYFAEAEKDALSKPLVLWLNGGPGCSSLGVGAFSENGPFRPKGEGLVRNQFSWNKEANMLYLETPIGVGFSYSTDTSSYEGVNDKITGKFLMFTPLFDITNFLLFTGDNLVFLQNWFMKFPEYRNRSLFIVGESYAGHYVPQLAELMLRFNRKEKLFNLKGIALGNPVLEFATDFNSRAEFFWSHGLISDTTYKMFTSVCNYSTYVREYYNGAVSPICSSVMSQVSTETSRFVDKYDVTLDVCLSSVFSQTKVLNPQQVTETIDVCVEDETVNYLNRKDVQSALHAHLVGVQRWSACSNVLDYELRDLEIPTITVVGKLVKEGIPVLVYSGDQDSVIPLTGSRTLVHKLAKELGLNTTVPYRVWFEKQQVGGWTQVYGNILSFATIRGASHEAPFSQPERSLVLFKSFLEGGPLPQEI 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g02548 479 ProSitePatterns Serine carboxypeptidases, histidine active site. 442 459 IPR033124 GO:0004185
Gma18g02548 479 PANTHER CARBOXYPEPTIDASE 6 477 - -
Gma18g02548 479 Gene3D - 327 363 - -
Gma18g02548 479 Pfam Serine carboxypeptidase 37 472 IPR001563 GO:0004185|GO:0006508
Gma18g02548 479 Gene3D - 374 472 - -
Gma18g02548 479 ProSitePatterns Serine carboxypeptidases, serine active site. 191 198 IPR018202 GO:0004185
Gma18g02548 479 Gene3D alpha/beta hydrolase 27 306 IPR029058 -
Gma18g02548 479 SUPERFAMILY alpha/beta-Hydrolases 32 475 IPR029058 -
Gma18g02548 479 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 6 477 IPR001563 GO:0004185|GO:0006508
Gma18g02548 479 PRINTS Carboxypeptidase C serine protease (S10) family signature 110 122 IPR001563 GO:0004185|GO:0006508
Gma18g02548 479 PRINTS Carboxypeptidase C serine protease (S10) family signature 177 202 IPR001563 GO:0004185|GO:0006508
Gma18g02548 479 PRINTS Carboxypeptidase C serine protease (S10) family signature 123 133 IPR001563 GO:0004185|GO:0006508
Gma18g02548 479 PRINTS Carboxypeptidase C serine protease (S10) family signature 442 455 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g02548 Gma-Chr18 59591495 59594775 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g02548 335 475 Calmodulin-binding Proteins AT2G22960 26.950 9.01e-14 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g02548 K16297 - gmx:100789658 911.368
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g02548 18 59591495 59594775 Gma08g02399 08 23725760 23729355 GST