Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g02542 ATGTCTGAAATGGTTTCTGCTCTTGCTCAAGTTATGGGAACTACCAATCGGAACCCATACATGCCACAATCAACCTCCTTTCCTTTCTCAACTTCCGTGGTCAAAGATCAACCTCAACCGTACCCATCTCAACCTCCTCCAGATCAAGaggtggCAAAGAAGCCACACTACAGAggagtgaggcagagaccatgggggaaatgggcagcagaaatccgtgacccaaaaaaagcagccagagtgtggctaggaacctttgaaacagcagaggatgcagcacttgcatatgacaaagcagcACTCAAGTTCAAAGGCACAAAAGCTAAGCTCAATTTCCCTGAAAGAGTTCATCAAGATGTTCCCTTTATGCAACAACACCAACAACGTTCATCAAACAGAAACGTTTTTCCCATCCATGCAACTTCCACCACTAGTAGTGCTACTGGGTCTGTTTCTTCTGTTGATGCTGTTGCTCCTCCTTCGTTGTCCACTCATGATCAACATGGCCACCAAGTTTTCCCAAATCTGTATCAATATGCACAGATTCTTTCAAGTGATGATGCACAGTTACCTTATTTCACATCCCATCTTTTCAATCAACAACAACAACAGCAACAGCAACAACCTTTCAATTCTCAATTCTCTAGCACTTTTTCTTCAACCTCATCCTACTTCTACAACCAGCAACAACAATATGATCAACAAGGACATGATCACTCAAACCACTAG 729 0.3429 MSEMVSALAQVMGTTNRNPYMPQSTSFPFSTSVVKDQPQPYPSQPPPDQEVAKKPHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEDAALAYDKAALKFKGTKAKLNFPERVHQDVPFMQQHQQRSSNRNVFPIHATSTTSSATGSVSSVDAVAPPSLSTHDQHGHQVFPNLYQYAQILSSDDAQLPYFTSHLFNQQQQQQQQQPFNSQFSSTFSSTSSYFYNQQQQYDQQGHDHSNH 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g02542 242 PRINTS Ethylene responsive element binding protein signature 57 68 IPR001471 GO:0003700|GO:0006355
Gma18g02542 242 PRINTS Ethylene responsive element binding protein signature 79 95 IPR001471 GO:0003700|GO:0006355
Gma18g02542 242 PANTHER DNA-BINDING DOMAIN 29 233 IPR044808 GO:0003700|GO:0009873
Gma18g02542 242 SUPERFAMILY DNA-binding domain 56 114 IPR016177 GO:0003677
Gma18g02542 242 Gene3D AP2/ERF domain 56 115 IPR036955 GO:0003700|GO:0006355
Gma18g02542 242 MobiDBLite consensus disorder prediction 143 167 - -
Gma18g02542 242 SMART rav1_2 56 119 IPR001471 GO:0003700|GO:0006355
Gma18g02542 242 Pfam AP2 domain 55 105 IPR001471 GO:0003700|GO:0006355
Gma18g02542 242 ProSiteProfiles AP2/ERF domain profile. 56 113 IPR001471 GO:0003700|GO:0006355
Gma18g02542 242 MobiDBLite consensus disorder prediction 14 38 - -
Gma18g02542 242 MobiDBLite consensus disorder prediction 14 60 - -
Gma18g02542 242 PANTHER AP2/ERF DOMAIN-CONTAINING TRANSCRIPTION FACTOR-LIKE PROTEIN ISOFORM 2 29 233 - -
Gma18g02542 242 CDD AP2 55 114 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g02542 Gma-Chr18 59506961 59511058 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g02542 4 198 AP2-EREBP Transcription Factor Family AT5G13330 46.040 8.41e-44 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gma18g02542 AP2 5.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g02542 - - gmx:100500531 391.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g02542 18 59506961 59511058 Gma08g02393 08 23649421 23651961 GST