Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g02518 ATGGGGACTCAAAGAGGAATAGCTCTTCTCAGTTTCACATTCTTCTTGTTGTTGAGCTCAGCAAATGCTTTGCTTTCTCCTAAGGGAGTGAACTTTGAAGTGCAAGCCTTAATGGGCATAAAAGATTCTTTAGAGGATCCACATGGTGTTCTAGATAATTGGGATGGGGATGCAGTTGATCCATGTAGCTGGACTATGGTCACTTGTTCTTCTGAAAACTTGGTCATTGGACTGGGCACTCCAAGTCAAAGTTTATCTGGTACTCTATCTCCAAGCATAGGCAACTTAACCAACCTTCAGATTGTGCTGCTACAGAATAACAACATAAGTGGACCAATCCCTTCAGAGTTAGGCAAACTTTCAAAGCTTCAAACGCTTGATCTCTCTAACAACTTCTTCAGTGGGGGGATTCCTCCCTCTCTTGGTCACCTAAGAAGCCTCCAGTACCTGAGATTCAATAATAACAGTCTTGTTGGTGAATGCCCAGAGTCACTGGCTAACATGACTCAGCTTAATTTTCTtgatttgtcatacaacaatcttagtggtccggtgcctAGAATTTTAGCCAAATCATTCAGCATTATTGGAAACCCCCTTGTTTGTGCCACGGGAAAAGAGCCAAACTGCCATGGGATGACATTGATGCCTATGTCCATGAACTTAAACAACACTGAAGATGCTTTACAATCAGGCAGACCAAAAACTCATAAAATGGCAATTGCCTTTGGCTTGAGTTTGGGATGTCTCTGCCTCATAGTTCTTGGTTTTGGACTTGTTCTTTGGTGGAGGCACAAACACAATCAACAAGCATTCTTTGATGTTAAAGTTCCTCAAAGTTATGCCATATTCTTAACTGTTTCAGACCGGCACCATGAAGAAGTCTACCTTGGAAACTTGAAGAGGTTCCAATTCAGAGAACTCCAGATTGCTACTAACAACTTCAGCAGCAAAAACATACTGGGAAAGGGTGGTTTTGGAAATGTCTACAAAGGAGTTTTCCCTGATGGCACTCTTGTGGCTGTCAAGAGGCTTAAAGATGGTAATGCCATTGGAGGAGAGATTCAATTTCAGACCGAAGTTGAAATGATCAGCCTAGCAGTGCACCGAAACCTCCTCAGACTGTATGGATTTTGCATGACACCAACGGAAAGGCTCTTGGTTTATCCATACATGTCCAATGGCAGTGTTGCTTCCCGTCTCAAGGGTAAGCCAGTGCTGGACTGGGGCACAAGGAAGCACATTGCTTTAGGAGCAGGAAGAGGActactttaccttcatgagcagtgtgatccaaagataatccatagggatgtgaaagctgccaacatattgcttgatgactattatgaagctgtagttggagattttgggttggcaaagcttttggatcaccaagattcacatgtcacaactgcagtgaggggcactgtggggcatattgccccagagtacttatccacaggacaatcctctgagaagactgatgtttttggatttggCATTCTCCTCCTTGAATTGATCACAGGCCAAAGGGCTCTAGAGTTTGGAAAATCAGCTAACAACAAAGGAGCCATGCTTGATTGGGTAAAGAAAATTCATCAGGAGAAAAAGCTTGATATGCTAGTAGACAAGGATCTCAAGAACAACTATGACAGAATTGAGCTTGAGGAAATGGTTCAAGTGGCTCTCTTGTGTACTCAATATCTTCCCGGCCATAGACCAAAAATGTCTGAAGTGGTACGCATGCTTGAAGGTGATGGACTAGCAGAAAAATGGGAAGCTTCTCAAAGAGTTGACTCAACAAAGTGCAAACCACAAGAGTCCTCTTCATCAGATAGGTATTCTGATCTCACTGATGACTCTTTGTTGTTAGTCCAAGCCATGGAACTCTCAGGACCCAGGTGA 1908 0.37 MGTQRGIALLSFTFFLLLSSANALLSPKGVNFEVQALMGIKDSLEDPHGVLDNWDGDAVDPCSWTMVTCSSENLVIGLGTPSQSLSGTLSPSIGNLTNLQIVLLQNNNISGPIPSELGKLSKLQTLDLSNNFFSGGIPPSLGHLRSLQYLRFNNNSLVGECPESLANMTQLNFLDLSYNNLSGPVPRILAKSFSIIGNPLVCATGKEPNCHGMTLMPMSMNLNNTEDALQSGRPKTHKMAIAFGLSLGCLCLIVLGFGLVLWWRHKHNQQAFFDVKVPQSYAIFLTVSDRHHEEVYLGNLKRFQFRELQIATNNFSSKNILGKGGFGNVYKGVFPDGTLVAVKRLKDGNAIGGEIQFQTEVEMISLAVHRNLLRLYGFCMTPTERLLVYPYMSNGSVASRLKGKPVLDWGTRKHIALGAGRGLLYLHEQCDPKIIHRDVKAANILLDDYYEAVVGDFGLAKLLDHQDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQRALEFGKSANNKGAMLDWVKKIHQEKKLDMLVDKDLKNNYDRIELEEMVQVALLCTQYLPGHRPKMSEVVRMLEGDGLAEKWEASQRVDSTKCKPQESSSSDRYSDLTDDSLLLVQAMELSGPR 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g02518 635 SUPERFAMILY L domain-like 33 318 - -
Gma18g02518 635 SMART serkin_6 315 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma18g02518 635 Pfam Leucine rich repeat N-terminal domain 33 70 IPR013210 -
Gma18g02518 635 ProSitePatterns Serine/Threonine protein kinases active-site signature. 434 446 IPR008271 GO:0004672|GO:0006468
Gma18g02518 635 Pfam Leucine rich repeat 122 181 IPR001611 GO:0005515
Gma18g02518 635 SUPERFAMILY Protein kinase-like (PK-like) 292 585 IPR011009 -
Gma18g02518 635 Gene3D Phosphorylase Kinase; domain 1 284 391 - -
Gma18g02518 635 Pfam Protein kinase domain 316 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma18g02518 635 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 4 635 - -
Gma18g02518 635 MobiDBLite consensus disorder prediction 602 618 - -
Gma18g02518 635 ProSiteProfiles Protein kinase domain profile. 315 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma18g02518 635 PANTHER PROTEIN NSP-INTERACTING KINASE 1-LIKE ISOFORM X1 4 635 - -
Gma18g02518 635 Gene3D Transferase(Phosphotransferase) domain 1 392 604 - -
Gma18g02518 635 MobiDBLite consensus disorder prediction 594 618 - -
Gma18g02518 635 ProSitePatterns Protein kinases ATP-binding region signature. 321 343 IPR017441 GO:0005524
Gma18g02518 635 Gene3D Ribonuclease Inhibitor 30 212 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g02518 Gma-Chr18 59266739 59270848 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g02518 1 635 Receptor kinase-like Gene Family AT5G16000 77.223 0.0 997
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Gma18g02518 Pkinase 1.2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g02518 - - gmx:100797768 1209.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g02518 18 59266739 59270848 Gma08g02364 08 23120440 23124452 GST
Gma13g00354 13 15330292 15334380 Gma18g02518 18 59266739 59270848 PCT
Gma19g00368 19 5644164 5648005 Gma18g02518 18 59266739 59270848 PCT
Gma18g02518 18 59266739 59270848 Gma13g00354 13 15330292 15334380 PCT
Gma18g02518 18 59266739 59270848 Gma19g00368 19 5644164 5648005 PCT