Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g02517 ATGTTGGAGGGCCAAGCAACAACGCCCACGTGGCCGCGCATGTGCGACACGTGCCGCTCCGTCCCCTCCACCGTCTTCTGCCGCTCCCACACCGCCTTTCTCTGCGCCACGTGCGACACTCGCCTCCACGTCTCGCTCACGTGGCACGAGCGCGTGTGGGTGTGCGAGGCGTGCGAGCGCGCCCCGGCGGCGTTCCTCTGCAAGGCCGACGCCGCCTCCCTCTGCGCCTCCTGCGACGCCGACATCCACGCCGCCAACCCCCTCGCCAGCCGCCACCACCGCGTCCCCATCCTCCCCATCGCCGCCGCCAacaacaacaacaacgacgacgacgacgttgctgacgttgacgacgaagacgaAACCGCTTCATGGCTCTTGCTCAACCCTATCAAGAGTGCTACTGTCCCTAACACCAATAACAATAACAATAATAACGGGTTCTTGTATAACGGTGAGGTTGATGAGTATTTGGACCTTGTTGATAATTGTAACTCTTGTGGTGATAATAATCACTTCGCTTCAGCTGCTGCTACTACTGATCATTACGCTCAGCACCAACATTTCGCTGGTGTTTCTCAGAAGAGTTATGCTGGGGACAGTGTTGTTCCGGTTCAGCAACACCAGCATTTTCAGCTTGGGTTGGACTTTGACAACTCCAAACCTGCCTTCAGTTACAATGGTTCTGTTAGTCAAAGTGTTTCAGTTTCATCAATGGATATTGGTGTTGTACCTGAATCACCAATGAGGGATGTCTCAATTGCCCATACAAGACCCCCCAAAGGGACAATTGACCTATTTTCTGGACCTCCAATTCAGGTGCCTTCCCATTTTTCTCCAATGGACAGGGAGGCCAGAGTCCTAAGGTACAGGGAGAAAAAGAAGATGAGAAAATTTGAGAAGACAATCAGGTATGCCTCAAGGAAGGCCTATGCAGAGACTAGACCTCGTATAAAAGGTCGATTTGCCAAGAGAACAGATGTAGAAGCTGAAGTGGATCAGATGTTCTCGACAACACTAATTACAGAAGTTGGATATGGAATTGTTCCCTCTTTCTGA 1059 0.4958 MLEGQATTPTWPRMCDTCRSVPSTVFCRSHTAFLCATCDTRLHVSLTWHERVWVCEACERAPAAFLCKADAASLCASCDADIHAANPLASRHHRVPILPIAAANNNNNDDDDVADVDDEDETASWLLLNPIKSATVPNTNNNNNNNGFLYNGEVDEYLDLVDNCNSCGDNNHFASAAATTDHYAQHQHFAGVSQKSYAGDSVVPVQQHQHFQLGLDFDNSKPAFSYNGSVSQSVSVSSMDIGVVPESPMRDVSIAHTRPPKGTIDLFSGPPIQVPSHFSPMDREARVLRYREKKKMRKFEKTIRYASRKAYAETRPRIKGRFAKRTDVEAEVDQMFSTTLITEVGYGIVPSF 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g02517 352 CDD Bbox1 14 43 - -
Gma18g02517 352 ProSiteProfiles Zinc finger B-box type profile. 10 54 IPR000315 GO:0008270
Gma18g02517 352 Pfam CCT motif 283 325 IPR010402 GO:0005515
Gma18g02517 352 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 1 11 352 - -
Gma18g02517 352 SMART bboxneu5 50 97 IPR000315 GO:0008270
Gma18g02517 352 SMART bboxneu5 10 47 IPR000315 GO:0008270
Gma18g02517 352 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 11 352 IPR045281 GO:0009909
Gma18g02517 352 CDD Bbox1_BBX-like 54 97 - -
Gma18g02517 352 ProSiteProfiles CCT domain profile. 283 325 IPR010402 GO:0005515
Gma18g02517 352 ProSiteProfiles Zinc finger B-box type profile. 50 97 IPR000315 GO:0008270
Gma18g02517 352 Pfam B-box zinc finger 52 97 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g02517 Gma-Chr18 59250461 59252810 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g02517 10 352 C2C2-CO-like Transcription Factor Family AT3G02380 53.463 3.42e-120 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Gma18g02517 zf-B_box 8.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g02517 - - gmx:100301886 665.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g02517 18 59250461 59252810 Gma08g02363 08 23095162 23097808 GST
Gma13g00355 13 15352410 15354828 Gma18g02517 18 59250461 59252810 PCT
Gma19g00366 19 5574524 5576590 Gma18g02517 18 59250461 59252810 PCT
Gma18g02517 18 59250461 59252810 Gma13g00355 13 15352410 15354828 PCT
Gma18g02517 18 59250461 59252810 Gma19g00366 19 5574524 5576590 PCT