Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g02484 ATGGGAAGGGGTAGGGTTCAGCTGAAGCGGATCGAGAACAAAACAAGCCAGCAAGTGACGTTTTTCAAGCGTAGATCGGGACTTCTCAAGAAAGCCAGCGAAATCTCTGTGCTATGTGATGCTCAAGTTGCTTTGATTATATTTTCTACCAAAGGCAAACTTTTTGAGTATTCCTCTGAACGCAGCATGGAAGACCTCCTTGAACGTTACGAGAGATGTAGCCATACAGCACTTGCTGGAGCTAACAATGTCGAATCACCGGGATTTTGGTCTTTCGAACATATCAAGCTCACCGCTAAAGTTGAAGTCTTGGAGAGGAACATAATGAATTTCTTTGGAAATGATCTGGATCCCTTGAGTTTGAAAGAGCTTCACAGTTTGGAGCAGCAGATTGAGACATCTCTGAAGCGCATCCGAACTAGAAAGAATCAAGTTATGAATCAATCCGTCTCAGACCTGCATAAAAAGGCAAGGACATTACAAGTGCAAAACAGATGGCTAGGAAAGATGAAGGAGAAAGCGAAGACAGTGACTGAAGGTCCACACAACGGCCCAGAAACTCTAGGCTTTGATTCATCCACACTCAACTTATCTTCTCCACAGCTACCACCACCACCATCACCACAAAGACTGGTTCCTTCTCTAACTCTCAGTGAGACAATGCAAGGAGGAACACCAGTGGAAGAAACGGGTGAGGCTCAAACAGTCCCTAGTGGCAATTCTCTCATCCCACCATGGATGCTGCGCTGCATGTCTGACTAG 762 0.4554 MGRGRVQLKRIENKTSQQVTFFKRRSGLLKKASEISVLCDAQVALIIFSTKGKLFEYSSERSMEDLLERYERCSHTALAGANNVESPGFWSFEHIKLTAKVEVLERNIMNFFGNDLDPLSLKELHSLEQQIETSLKRIRTRKNQVMNQSVSDLHKKARTLQVQNRWLGKMKEKAKTVTEGPHNGPETLGFDSSTLNLSSPQLPPPPSPQRLVPSLTLSETMQGGTPVEETGEAQTVPSGNSLIPPWMLRCMSD 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g02484 253 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gma18g02484 253 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN FUL-L 1 224 - -
Gma18g02484 253 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gma18g02484 253 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gma18g02484 253 MobiDBLite consensus disorder prediction 173 242 - -
Gma18g02484 253 MobiDBLite consensus disorder prediction 212 241 - -
Gma18g02484 253 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Gma18g02484 253 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gma18g02484 253 PANTHER MADS BOX PROTEIN 1 224 - -
Gma18g02484 253 Pfam K-box region 89 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gma18g02484 253 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gma18g02484 253 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gma18g02484 253 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gma18g02484 253 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Gma18g02484 253 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g02484 Gma-Chr18 58912900 58920971 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g02484 1 242 MADS-box Gene Family AT1G26310 46.939 3.21e-66 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gma18g02484 K-box 1.2e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g02484 K09264 - gmx:100788956 475.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g02484 18 58912900 58920971 Gma08g02320 08 22448104 22460685 GST
Gma18g02484 18 58912900 58920971 Gma13g00373 13 15630255 15651702 PCT
Gma18g02484 18 58912900 58920971 Gma19g00325 19 4569232 4586899 PCT