Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g02482 ATGGAAGCTATGATGGGTTCCCTAGCAACCGAGAAAGAGTGGAGGAAAGGCCCTTGGACTGGTGAAGAGGACAAGTTGCTAAGTGAATATGTTTGCTTGCATGGGGAGGGTAGATGGAGCTCGGTGGCCCAGTGTACAGGATTAAAAAGAAATGGCAAAAGCTGCAGGTTAAGATGGGTAAATTATTTGAGGCCCGGCCTCAAGAGAGGTCAACTAACACCTATAGAAGTAGGAATCATTATTGAACTACATGCAATTTTTGGTAACAAGTGGTCTACAATTGCAAAGTACTTGCCAGGAAGAACTGATAACGATATTAAGAACTATTGGAGAACTCACTTCGAGAAGAGTGGGAAATCCAAACACAAGAAGCTAGAAATGCAAAAGGCAAAGGTGCTAAAACAGTTGAAACAAAAGCAACAACCTCAAGAGTATGATGTCAAAAGCATCAAGTCCCATGAAGAGACAAAAAATGAAACAAAATCCTATGAGACAGAAAATAATAAGCAAAAAGAAGTGGATTTCATGTGTCCAACAATGGAGCACCAATACATTGTTCCATCAATGCATGAGGGATTCTCATCCACGTGGCCAGACACAGTACTAGGGGATGATGGCTCATGGTTTAGTTTATGGGACTTTGATGATGAACCACAATGTTCTGCAGATTATGTTAACCAATTTAGCGAAAGTGTCGTGCCAAATCAAGCTACCTTTGGAGTTGGAGAGGATTCCATGCAAAATCACGATAAAATCTTTTATTTCGATGATATATAA 777 0.4041 MEAMMGSLATEKEWRKGPWTGEEDKLLSEYVCLHGEGRWSSVAQCTGLKRNGKSCRLRWVNYLRPGLKRGQLTPIEVGIIIELHAIFGNKWSTIAKYLPGRTDNDIKNYWRTHFEKSGKSKHKKLEMQKAKVLKQLKQKQQPQEYDVKSIKSHEETKNETKSYETENNKQKEVDFMCPTMEHQYIVPSMHEGFSSTWPDTVLGDDGSWFSLWDFDDEPQCSADYVNQFSESVVPNQATFGVGEDSMQNHDKIFYFDDI 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g02482 258 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Gma18g02482 258 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 67 IPR017930 -
Gma18g02482 258 CDD SANT 73 114 IPR001005 -
Gma18g02482 258 SMART sant 68 116 IPR001005 -
Gma18g02482 258 SMART sant 15 65 IPR001005 -
Gma18g02482 258 PANTHER MYB TRANSCRIPTION FACTOR 3 234 - -
Gma18g02482 258 Gene3D - 16 68 - -
Gma18g02482 258 MobiDBLite consensus disorder prediction 144 168 - -
Gma18g02482 258 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Gma18g02482 258 Pfam Myb-like DNA-binding domain 73 113 IPR001005 -
Gma18g02482 258 Gene3D - 71 153 - -
Gma18g02482 258 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Gma18g02482 258 CDD SANT 18 63 IPR001005 -
Gma18g02482 258 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 118 IPR017930 -
Gma18g02482 258 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 3 234 IPR044676 GO:0003700|GO:0006355|GO:0043565
Gma18g02482 258 Coils Coil 153 173 - -
Gma18g02482 258 MobiDBLite consensus disorder prediction 137 168 - -
Gma18g02482 258 SUPERFAMILY Homeodomain-like 14 110 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g02482 Gma-Chr18 58883108 58884130 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g02482 15 219 MYB Transcription Factor Family AT3G30210 49.758 2.56e-65 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma18g02482 Myb_DNA-binding 2.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g02482 K09422 - gmx:100817474 532.332
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g02482 18 58883108 58884130 Gma08g02318 08 22404833 22406412 GST