LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma18g02464	ATGGACACAACTTGCATACGATTTGCTTTAGGAGCCATCCTCCTCCACCTGCTGTTGTTGTCCCTCCCTAACCTTTCCATAGCAGAGTTTATTTATAGTCCCCATGAGATCTTCAGCATCAACTGTGGCTCTAACAGTAGCTTGTCCACTCGCGATGGTCGCAATTGGACTGCAGACATCAAATTCCTCTCAGAAAACAAGGACTCAGTTGCTGCTCCTGCACTCACACCATCTACCCTGGaaggtccttacaccgatgctcgtttctctcactcccaattcacttactctttccctgtctccacaggccctaagtttcttcgcctcttcttctactcaacttcctaccaaaacttccatcgctccaaagcctatttctcagtcaaagcaggcccacacaccctccttcaaaatttcaacgcttccctccatgctgatgctggtaacgagcccggcgactacttgttcagggagtattgcatcaacctcaaagatggcgatcggctcaacataaccttcattccaagcaaaacatctcagaatccagattcgtacgctttcatcaatggaatagagattgtttcaatgccCCCTTTTCTCTACTACACCAATCCTGACGACGTCGACATCACTTGGTTGCCTCAACCCGTTGGCCTCAATACGAACCCGTTCCCCATTgaaaacaactttgctctggagacaaattatcggttaagagttggagaccaacaaatcccggcctcacaggacacgggtatgctcaggatctgggatgtggataacaaatatgtaacgactcaaagtgtactatctctagatattggcactggaattaagctgagattcacaaagattcctaactacacggcaccagacacagtgtaccgatccgtaaggaatatgggaagtaatggcaccatcaacatggggttcaacctcacatggcaacttcccgttgattcaggcttcacctacttgctaaggttacacttttgccagcttgacccggatatgaaaaatcctggttaccagagcttcttcatattcgttcaggatcagttggttgaaatgtgggcagacattctcggttggagcgataaacaggagggtgtcccagtggttaaacagtatgtagttttcatcccagggaatcagcaggaaacgcttaatctttcactgaaaatgcatcctaaccctaaaagcttggccaaggacgctcaaataaacgcaattgaactcttcaaaatcaacaacacaacaggtaacctcgctggacctaacccagactcTCATCCAAAGACCTCCGAGGTTCTTCTTCCGAGCTCAAACAAGAAAAGCAAAGGCAGCACGAGAACCCTAACTGCCGCCGTCGCAGGCACAGTTTCCGGTGTCGTTATGTTATCCCTTTCTGTTGCTTTCTTCCTCACCAAACGCAAGAAGAACATGGCCGTCGACGAAGGTTCCAATAAAAAAGGTGGAACTTCTCGAGGCGGTGGCTCAtcgtcgctaccaaccaacctctgccgtaagttctcaatcgcggaaatcagagccgccaccaacaacttcgacgaactcttcgtggttggattgggaggcttcggcaacgtgtacaaaggatacatcgatgacggttcaaccccagtcgcaatcaaaaggctcaaagcggattctcggcagggtgcgcaggagttcctgaacgagattgaaatgctgtctcaacttcgccatctccatcttgtctccctcgttggttactgttacgagagcaacgaaatgatactggtgtatgatttcatggatcggggttccctccgtgagcatctctacgacactgataacccttccctttcatggaaacaaaggctccagatatgcataggtgtcggacgaggactgcattatctacatacgggcacgaaggatgtgatcattcaccgtgatgtgaagagcgccaatatcttattggatgaaaaatgggtggccaaggtttcggacttcgggttatcccgaattgggcccacaggtatttctaggacccatgtgaacactcaagtgaaaggtagtattggatatttagacccagagtattacaaacgagatcgtttgactgtgaagtctgatgtgtactcctttggagtggtgctcttggaggtattatctggaaggcagcctttgctccattgggaggagaaacaacgaatgtcacttgttaaatgggcaaagcattgctatgagaagggaattctgagtgagattgtggatccagaactcaagggccagatagtacctcagtgtttgcgcaaatttggtgaggttgcactgagttgtttgcttgaggacgggactcaaaggccctccatgaaggacatcgttgggatgctggagttggttttgcagcttcaggatagtgcTcttcaggatagtgcTGCTAATGATGGAGTCATGGAGAGTGGCAGGGATTATGAAGATAGTGAGGACGTGTTTGGCAGTAGCCATAGTAGTGTACATGTTTCAGATTATAGTAAGAGCACTGGATTGAGCACCACAAGCGAAGGAGATCGCAGGCCAAAACGTGTGGAACTGGTGAGAAACTCGAGAAACAGGAAACTCACAAATGAAAGAAGACGGGACTGCCAAATGTCAATTATAAATGAGAAATTGGAGACGAAAAGAAGGCAGAAATTAGGAGAAATGTTTCTCAAATGTTTGAGCTTCTGCCGTTCGAAGCACACAAGTTCATCTCAGAGACAGTATCCAACAGAAGCATCTGGTAAAGTATACAAAGGTTATCTCCAACATCATGATGGTTCTGATTATACAGCCGCAGTGAAGAGATTCAATCAACTCGAATATGGAAAGAGTTCATTAATAAAATTGAATTGCTCTGCCAGCTTCATCACCCTAATTGGTGAAGTGGAGGTGGAACTTGAGCATGCTTTGCTGTTGAACTTGAGATGCAACAGGATTCCGGTCGAGGAGATTCGACAACCAATCATTGGCTCAAAAGGTCTATAA	3018	0.171	MDTTCIRFALGAILLHLLLLSLPNLSIAEFIYSPHEIFSINCGSNSSLSTRDGRNWTADIKFLSENKDSVAAPALTPSTLEGPYTDARFSHSQFTYSFPVSTGPKFLRLFFYSTSYQNFHRSKAYFSVKAGPHTLLQNFNASLHADAGNEPGDYLFREYCINLKDGDRLNITFIPSKTSQNPDSYAFINGIEIVSMPPFLYYTNPDDVDITWLPQPVGLNTNPFPIENNFALETNYRLRVGDQQIPASQDTGMLRIWDVDNKYVTTQSVLSLDIGTGIKLRFTKIPNYTAPDTVYRSVRNMGSNGTINMGFNLTWQLPVDSGFTYLLRLHFCQLDPDMKNPGYQSFFIFVQDQLVEMWADILGWSDKQEGVPVVKQYVVFIPGNQQETLNLSLKMHPNPKSLAKDAQINAIELFKINNTTGNLAGPNPDSHPKTSEVLLPSSNKKSKGSTRTLTAAVAGTVSGVVMLSLSVAFFLTKRKKNMAVDEGSNKKGGTSRGGGSSSLPTNLCRKFSIAEIRAATNNFDELFVVGLGGFGNVYKGYIDDGSTPVAIKRLKADSRQGAQEFLNEIEMLSQLRHLHLVSLVGYCYESNEMILVYDFMDRGSLREHLYDTDNPSLSWKQRLQICIGVGRGLHYLHTGTKDVIIHRDVKSANILLDEKWVAKVSDFGLSRIGPTGISRTHVNTQVKGSIGYLDPEYYKRDRLTVKSDVYSFGVVLLEVLSGRQPLLHWEEKQRMSLVKWAKHCYEKGILSEIVDPELKGQIVPQCLRKFGEVALSCLLEDGTQRPSMKDIVGMLELVLQLQDSALQDSAANDGVMESGRDYEDSEDVFGSSHSSVHVSDYSKSTGLSTTSEGDRRPKRVELVRNSRNRKLTNERRRDCQMSIINEKLETKRRQKLGEMFLKCLSFCRSKHTSSSQRQYPTEASGKVYKGYLQHHDGSDYTAAVKRFNQLEYGKSSLIKLNCSASFITLIGEVEVELEHALLLNLRCNRIPVEEIRQPIIGSKGL	1005

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma18g02464	1005	SUPERFAMILY	Protein kinase-like (PK-like)	500	797	IPR011009	-
	Gma18g02464	1005	MobiDBLite	consensus disorder prediction	852	874	-	-
	Gma18g02464	1005	MobiDBLite	consensus disorder prediction	422	449	-	-
	Gma18g02464	1005	ProSiteProfiles	Protein kinase domain profile.	523	799	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gma18g02464	1005	MobiDBLite	consensus disorder prediction	831	851	-	-
	Gma18g02464	1005	PANTHER	OS07G0166700 PROTEIN	30	847	IPR045272	GO:0004714\|GO:0006468
	Gma18g02464	1005	ProSitePatterns	Protein kinases ATP-binding region signature.	529	552	IPR017441	GO:0005524
	Gma18g02464	1005	CDD	STKc_IRAK	529	796	-	-
	Gma18g02464	1005	Gene3D	-	35	196	-	-
	Gma18g02464	1005	Gene3D	-	230	418	-	-
	Gma18g02464	1005	Pfam	Protein tyrosine and serine/threonine kinase	529	794	IPR001245	GO:0004672\|GO:0006468
	Gma18g02464	1005	Pfam	Malectin-like domain	40	416	IPR024788	-
	Gma18g02464	1005	SMART	serkin_6	523	798	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gma18g02464	1005	Gene3D	Transferase(Phosphotransferase) domain 1	600	821	-	-
	Gma18g02464	1005	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	644	656	IPR008271	GO:0004672\|GO:0006468
	Gma18g02464	1005	PANTHER	CARBOHYDRATE-BINDING PROTEIN OF THE ER PROTEIN	30	847	-	-
	Gma18g02464	1005	Gene3D	Phosphorylase Kinase; domain 1	508	599	-	-
	Gma18g02464	1005	MobiDBLite	consensus disorder prediction	815	874	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma18g02464	Gma-Chr18	58727425	58739559	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma18g02464	32	817	Receptor kinase-like Gene Family	AT3G51550	47.985	0.0	689

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_CrRLK1L-1	Gma18g02464		Malectin_like	9.4e-37	CL0202

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma18g02464	-		-	gmx:113000103	1397.1