Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g02445 atggcttcaaataatggccgtaaagcaagtgagatctttcaaggtcaacttctcttatacagacacatgtatgctcatgtagattctatgtttcttaaatgtatcgttgagcttggaataccaaacataatccacaaccatggtcaacccattactcttccaaaattggtgtcaattctacaagttccaccaaataaagttagtggcttgcagagtctcatgcgttatctagcacacaatggattctttgagatagtcacaatccatgacaacttggaagaaaaggaagcatatgctctcactgctgcatcagagcttcttgtcaaaggcagtgacctttgtttagcaccaatagttgagtgttttcttgacccaactttttcaagttcatggcatcaaatgaagaagtggatttatgaggatgatctcacactctttggtatctcattagggtcacacttgtgggactttctcaataaaagccctacacataacaaatcattcaatgaggcaatggctagtgattctcagatgatgaacttggcgttgagagattgcaattgggtctttgaaggactggagaccattgtggatgttggtggtggaactggaatcacagccaagattatctgtgaggcatttcctaagttgaaatgcatagtgttggaacgtccacatgttgtagatcagaacttgtcaggatgcaataatttgaaatatgtagttggggacatgtttaaatctattcccaaggctgatgcagttctacttaagtggatcttacataattggaatgacaacgattgcagaaagatattagaaaattgtaaagaagctattatttcgagtaaatgcaaaagaggaaaaCGCTTTCGCTTTCGCACACTCCCTTTTTTCGTGCGCAAGCTGTTCCCGTTGGTCTCTTCCCTCTGCACTACACATTCACAATCCCACACTCTCTCACTGTGCCATCTCTCATCATCTTCGCAATCGCACCCTTCCCAGATGGCTCTGCAAACAGCTACTCCTCCAACTACTCCCAGTGCCCAAGTTGTTGGTAATGCATTTGTTGAGCAGTATTACCATATTCTTCACCATTCGCCGGATTTGGTCTATCGGTTTTACCAGGACTCTAGTGTGATAAGCCGTCCTGATTCCAGTGGTGTGATGACATCAGTTACGACCATGAAAGGCATTAATGAGAAGATTCTATCACTAAATTTCAAGGAATTTAAAGCAGAGATAAAGACTGCAGATGCTCAAAAATCATACAAGGAAGGAGTGACTGTTCTGGTGACTGGATGCTTGACTGGCAAGGATAACTTAAGAAGAAAATTTGCGCAGTCATTCTTTCTTGCTCCACAAGACAATGGCTATTTTGTTCTGAATGATGTTTTTAGGTATGTAGAAGACCATGAACCATCAGAACTGCCTCCAGTTACTGGAGATGGTGATGCAGCTGCTGTTACAGTAACACCAGAACCAGGCAAGATTATAATTCAAAAAATTTGTATCTTCTCTTTCAAAATTTATTCAGGAGTTGGATTCATGCTGTTCTCCTTCTTTACAGAACCCAGTCATTTTGCTGATTCTTCTGCACCTGACCCCACAAATTCTCATGTGAACAAAGGTCAAGCTGTTGCTGAGAATGCTTATGAGCCATCTAATCACCATGAGAGACAGATACCTGTTGAGAATGTCGACAATGTAGAACCACATTTTCAGTCAAATGGTAATGATGATTCTCAGGCCACAGAATTGGCTTCTTCAGCTCAAGAGAAGAAGTCTTATGCATCTATTGTGAAAGTCCAAAAAGAGGGTTCAGTTGCAACTAAAGTCTATGTGCCTACTAATACACTAAAGTCAGGGCCTAACAAAACTGAGAACAAGGTAGTTGAGTCAGTAGAATCTACTGAAGTGTCTGAAGCAGCTTTGGATAGTGTTAACAACCCTGAAAGTAGTGATGCTCATGAGGAAGTTGAGGGGCACTCCATTTACATTCGAAATTTGCCTTTAAATGTGACGGCTGCTCAGTTGGAACTGGAGTTTAAGAAATTTGGGCCCATCAAGCCAGGAGGCATCCAAGTCAGAAATAATAAGCAGGGATACTGCTTTGGCTTTGTTGAGTTCCTATCTCTAAATTCCATGAATAGTGCAATTCAGGCTTCGCCTGTTCCGATTGGGGGGCGTCAAGCTGTAGTTGAGATAAAGAGAACCACTACCCGGGTTGGCAGTGGCATTAACAGTACTGGAAGACCTAGGATCCCACCTGGTAGGGGTGGGTTACGAAATGACTCTTTCAGGGGTCGTGGGAATTATGGTGGTGGTCGGGGATACGGTCGAAATGATTATGTAAGCCGTGGCGAGTTTTCTGGTAGAGGTCATGGTCATGGTCATGGAGAAGGTTATCACCAAGGGAGAGGGAGAGGTGGCCGGTCAAGTGGACAAAAACAAAATGCTGTTTCCAACTGA 2472 0.2856 MASNNGRKASEIFQGQLLLYRHMYAHVDSMFLKCIVELGIPNIIHNHGQPITLPKLVSILQVPPNKVSGLQSLMRYLAHNGFFEIVTIHDNLEEKEAYALTAASELLVKGSDLCLAPIVECFLDPTFSSSWHQMKKWIYEDDLTLFGISLGSHLWDFLNKSPTHNKSFNEAMASDSQMMNLALRDCNWVFEGLETIVDVGGGTGITAKIICEAFPKLKCIVLERPHVVDQNLSGCNNLKYVVGDMFKSIPKADAVLLKWILHNWNDNDCRKILENCKEAIISSKCKRGKRFRFRTLPFFVRKLFPLVSSLCTTHSQSHTLSLCHLSSSSQSHPSQMALQTATPPTTPSAQVVGNAFVEQYYHILHHSPDLVYRFYQDSSVISRPDSSGVMTSVTTMKGINEKILSLNFKEFKAEIKTADAQKSYKEGVTVLVTGCLTGKDNLRRKFAQSFFLAPQDNGYFVLNDVFRYVEDHEPSELPPVTGDGDAAAVTVTPEPGKIIIQKICIFSFKIYSGVGFMLFSFFTEPSHFADSSAPDPTNSHVNKGQAVAENAYEPSNHHERQIPVENVDNVEPHFQSNGNDDSQATELASSAQEKKSYASIVKVQKEGSVATKVYVPTNTLKSGPNKTENKVVESVESTEVSEAALDSVNNPESSDAHEEVEGHSIYIRNLPLNVTAAQLELEFKKFGPIKPGGIQVRNNKQGYCFGFVEFLSLNSMNSAIQASPVPIGGRQAVVEIKRTTTRVGSGINSTGRPRIPPGRGGLRNDSFRGRGNYGGGRGYGRNDYVSRGEFSGRGHGHGHGEGYHQGRGRGGRSSGQKQNAVSN 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g02445 823 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 361 IPR016461 GO:0008168
Gma18g02445 823 Gene3D Vaccinia Virus protein VP39 108 288 IPR029063 -
Gma18g02445 823 Gene3D - 1 107 IPR036388 -
Gma18g02445 823 SUPERFAMILY RNA-binding domain, RBD 657 738 IPR035979 GO:0003676
Gma18g02445 823 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 336 822 IPR039539 -
Gma18g02445 823 Gene3D - 644 746 IPR012677 -
Gma18g02445 823 SUPERFAMILY NTF2-like 348 469 IPR032710 -
Gma18g02445 823 MobiDBLite consensus disorder prediction 640 660 - -
Gma18g02445 823 CDD NTF2 348 470 IPR018222 -
Gma18g02445 823 MobiDBLite consensus disorder prediction 788 806 - -
Gma18g02445 823 SMART rrm1_1 664 735 IPR000504 GO:0003723
Gma18g02445 823 CDD RRM_SF 665 735 - -
Gma18g02445 823 Gene3D - 343 472 - -
Gma18g02445 823 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 663 739 IPR000504 GO:0003723
Gma18g02445 823 ProSiteProfiles Nuclear transport factor 2 domain profile. 352 468 IPR018222 -
Gma18g02445 823 PANTHER RAS GTPASE-ACTIVATING BINDING-LIKE PROTEIN 336 822 - -
Gma18g02445 823 MobiDBLite consensus disorder prediction 570 590 - -
Gma18g02445 823 MobiDBLite consensus disorder prediction 743 823 - -
Gma18g02445 823 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 113 280 IPR029063 -
Gma18g02445 823 Pfam O-methyltransferase domain 131 280 IPR001077 GO:0008171
Gma18g02445 823 Pfam Nuclear transport factor 2 (NTF2) domain 352 468 IPR002075 -
Gma18g02445 823 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 665 722 IPR000504 GO:0003723
Gma18g02445 823 SUPERFAMILY "Winged helix" DNA-binding domain 10 111 IPR036390 -
Gma18g02445 823 Pfam Dimerisation domain 30 78 IPR012967 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g02445 Gma-Chr18 58485181 58495568 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g02445 14 280 Monolignol Biosynthesis Gene Families AT5G54160 30.545 8.27e-31 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g02445 K24983 - gmx:100805494 730.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g02445 18 58485181 58495568 Gma08g02276 08 21813473 21815336 GST