Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g02442 ATGTTTTCTTCTTCTTCAGTGATCAAATGGAGGTTCCGTCACAAGCCCATGACGCTCGTGCGACTCTTCCCACTCGTGTGCCTCCTTTTGTTCTCGCTAAACGACGTCGTTTCGTCCGATTCCGACAAATCAGTGCTCCTCGAGCTAAAACACTCGCTCTCCGACCCCTCCGGCCTGCTCACCACGTGGCAGGGCTCCGACCACTGCGCGTGGTCCGGCGTGCTCTGCGGCTCCGCCACGCGCCGCCGCGTCGTCGCGATCAACGTCACCGGCAACGGAGGTAACCGAAAAACCCTTTCTCCTTGCTCCGATTTTGCTCAATTTCCCCTCTACGGGTTCGGAATTAGGAGGAGCTGCGAGGGTTTTCGTGGAGCATTGTTCGGTAAGCTTTCTCCGAAGCTCAGTGAACTCACAGAACTTAGGGTTTTGTCCCTTCCCTTCAATGACCTCGAGGGAGAAATTCCCGAGGAAATTTGGGGCATGGAGAAGTTGGAGGTGCTTGATCTTGAAGGAAACTTGATAAGTGGGGTTCTCCCTCTTAGGTTTAATGGCTTGAAAAACTTGAAGGTTCTTAATCTAGGGTTTAATAGGATTGTTGGGGAGATTCCGAGTTCGCTGTCTAGTTTTAAGAGTTTGGAGGTTTTGAACTTGGCTGGGAATGGGATTAACGGTTCTGTTCCTAGCTTTGTTGGGAGGTTGAGAGGGGTGTATTTGTCTTATAACTTGCTTGGTGGGGCAATTCCGCAGGAGATTGGGGAACATTGTGGGCAACTGGATCATCTTGATTTGTCTGGTAATCTTTTGATGCAGGCAATTCCGGGGAGTTTGGGCAATTGTAGTGAGTTGAGGATGATTTTGTTGCATTCGAATTCATTGGAGGATGTTATTCCTGCTGAGCTTGGGAGGCTTAGGAAGCTTGAGGTGTTGGATGTGTCAAGGAATACGCTCGGTGGGCAGGTGCCGATGGAGCTTGGGAATTGTACTGAGTTGTCTGTGCTGGTTTTGTCTAATCTTTTTAGTTCGGTTCCAGATGTTAATGGTACCGTGAGGGACTTGGGGGTGGAGCAGATGGTTTCTATGAATATTGATGAGTTTAATTACTTTGAAGGTCCGGTTCCTGTTGAGATTATGAACCTTCCTAAGCTGAGAGTGCTGTGGGCGCCTAGGGCGAATCTGGCAGGCAGTTTTCCGAGCAGTTGGGGCAAGTGTGATAGCTTGGAGATGCTTAATTTGGCCCAAAATGATCTCACTGGGGATTTTCCTAATCAGCTTGGTGGCTGCAAGAATCTCCATTTTCTTGATTTGAGCGCAAACAACTTTACTGGCGTGCTTGcagaagaacttcctgtgccttgtatgactgtatttgatgttagtgggaatgtcttatctggcccaattcctcaattctctgttggcttgtgtgCTTTGGTTCCTTCCTGGAGTGGAAATCTGTTTGAAACAGACGACAGAGCACTTCCGTACAAATCCTTTTTTGTGTCTAAGATTCTTGGAGGAACCATTTTGTCCTCACTAGGAGAAGTTGGCCGTTCTGTTTTTCACAACTTTGGTCAAAACAACTTTGTTAGCATGGAGTCTTTGCCAATAGCACGTGACAGGCTGGGGAAGGGGTTGGCTTATGCAATTCTTGTTGGAGAAAACAAGTTGGCGGGACCTTTTCCTACTAATTTATTCGAGAAATGTGACGGACTAAATGCATTGCTTTTAAATGTGAGTTATACTATGATATCCGGTCAGATTCCTTCTAAGTTTGGTGGAATGTGCAGATCATTGAAATTCTTGGATGCATCTGGTAATCAGATTACTGGGCCAATCCCTGTAGGTTTGGGGGATATGGTTTCTCTTGTTTCTCTGAACCTAAGTCAGAATCGTTTACAAGATCAGATTCCCGGTAACCTTGGCCAGTTGAAAGATCTGAAGTTTCTCTCTTTGGCTGAGAATAACTTAAGTGGTTCCATCCCTACCAGCCTGGGGCAGTTGTACTCTTTAGAAGTCCTGGACCTTTCTTCAAATTCTCTTACAGGTGAAATTCCAAAAGGTATTGAGAACTTGAGAAACCTAACTGATGTATTGCTTAACAACAACAAACTTTCTGGACAGATTCCTGCTGGTTTGGCAAATGTCAGTACACTATCAGCATTTAATGTGTCATTCAATAACTTATCTGGATCCTTGCCTTCAAATGGTAACTCAATAAAATGCAGCAATGCTGTTGGGAATCCGTTTTTACATTCTTGCAATGAAGTTTCTCTTGCTGTGCCATCAGCTGACCAAGGGCAGGTTGATAATTCCAGTTCTTATACTGCTGCACCACCAGAAGTTACAGGCAAAAAGGGTGGGAATGGTTTCAATTCTATTGAAATAGCATCTATAACATCTGCATCGGCCATTGTTTCTGTTCTTCTAGCCCTAATTGTCCTTTTTATTTATACACGGAAGTGGAACCCTAGGTCCAGGGTTGTTGGGTCTACAAGAAAAGAAGTTACAGTGTTCACTGATATTGGTGTTCCATTGACATTTGAAAATGTTGTTCGGGCCACAGGAAATTTCAATGCTAGCAACTGCATTGGGAATGGAGGATTTGGGGCAACCTACAAGGCAGAGATAGTACCAGGAAACTTGGTGGCTATAAAACGTCTGGCAGTTGGACGATTCCAAGGTGCTCAACAATTCCATGCAGAGATTAAGACCCTTGGAAGGCTTCGTCATCCAAATCTTGTCACTCTGATTGGTTATCATGCCAGTGAGACTGAGATGTTTCTCATATACAACTACTTGCCAGGTGGCAATCTGGAAAAGTTTATCCAAGAGAGATCCACAAGGGCAGCGGATTGGAGGATTCTTCACaagattgcattggatatagcccgtgcacttgcatacctgcatgatcagtgtgtaccccgagttcttcatcgagatgtcaagcccagtaatatcttgctggatgatgattacaatgcttatctatctgactttggattggctagacttctGGGAACCTCAGAAACTCATGCTACCACTGGTGTAGCAGGAACATTTGGCTATGTTGCTCCTGAATATGCCATGACTTGTCGTGTTTCTGACAAGGCTGATGTGTATAGCTACGGTGTGGTGCTTCTGGAGTTACTCTCTGACAAGAAGGCATTGGATCCTTCATTTTCTTCATATGGGAATGGTTTCAACATAGTAGCATGGGCATGCATGCTGCTGCGACAAGGCCAGGCAAAAGAGTTCTTCGCCACCGGCTTATGGGATACAGGTCCCGAAGATGATTTGGTAGAGGTCCTACACTTGGCTGTTGTGTGTACGGTTGACTCTCTCTCGACCAGACCTTCAATGAAACATGTTGTACGGCGGCTTAAGCAACTTCAACCGCCATCATGCTAG 3411 0.4257 MFSSSSVIKWRFRHKPMTLVRLFPLVCLLLFSLNDVVSSDSDKSVLLELKHSLSDPSGLLTTWQGSDHCAWSGVLCGSATRRRVVAINVTGNGGNRKTLSPCSDFAQFPLYGFGIRRSCEGFRGALFGKLSPKLSELTELRVLSLPFNDLEGEIPEEIWGMEKLEVLDLEGNLISGVLPLRFNGLKNLKVLNLGFNRIVGEIPSSLSSFKSLEVLNLAGNGINGSVPSFVGRLRGVYLSYNLLGGAIPQEIGEHCGQLDHLDLSGNLLMQAIPGSLGNCSELRMILLHSNSLEDVIPAELGRLRKLEVLDVSRNTLGGQVPMELGNCTELSVLVLSNLFSSVPDVNGTVRDLGVEQMVSMNIDEFNYFEGPVPVEIMNLPKLRVLWAPRANLAGSFPSSWGKCDSLEMLNLAQNDLTGDFPNQLGGCKNLHFLDLSANNFTGVLAEELPVPCMTVFDVSGNVLSGPIPQFSVGLCALVPSWSGNLFETDDRALPYKSFFVSKILGGTILSSLGEVGRSVFHNFGQNNFVSMESLPIARDRLGKGLAYAILVGENKLAGPFPTNLFEKCDGLNALLLNVSYTMISGQIPSKFGGMCRSLKFLDASGNQITGPIPVGLGDMVSLVSLNLSQNRLQDQIPGNLGQLKDLKFLSLAENNLSGSIPTSLGQLYSLEVLDLSSNSLTGEIPKGIENLRNLTDVLLNNNKLSGQIPAGLANVSTLSAFNVSFNNLSGSLPSNGNSIKCSNAVGNPFLHSCNEVSLAVPSADQGQVDNSSSYTAAPPEVTGKKGGNGFNSIEIASITSASAIVSVLLALIVLFIYTRKWNPRSRVVGSTRKEVTVFTDIGVPLTFENVVRATGNFNASNCIGNGGFGATYKAEIVPGNLVAIKRLAVGRFQGAQQFHAEIKTLGRLRHPNLVTLIGYHASETEMFLIYNYLPGGNLEKFIQERSTRAADWRILHKIALDIARALAYLHDQCVPRVLHRDVKPSNILLDDDYNAYLSDFGLARLLGTSETHATTGVAGTFGYVAPEYAMTCRVSDKADVYSYGVVLLELLSDKKALDPSFSSYGNGFNIVAWACMLLRQGQAKEFFATGLWDTGPEDDLVEVLHLAVVCTVDSLSTRPSMKHVVRRLKQLQPPSC 1136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g02442 1136 Gene3D Ribonuclease Inhibitor 546 758 IPR032675 -
Gma18g02442 1136 SMART LRR_sd22_2 185 214 - -
Gma18g02442 1136 SMART LRR_sd22_2 161 182 - -
Gma18g02442 1136 SMART LRR_sd22_2 667 693 - -
Gma18g02442 1136 SMART LRR_sd22_2 137 160 - -
Gma18g02442 1136 ProSitePatterns Protein kinases ATP-binding region signature. 863 885 IPR017441 GO:0005524
Gma18g02442 1136 SUPERFAMILY Protein kinase-like (PK-like) 839 1128 IPR011009 -
Gma18g02442 1136 ProSitePatterns Serine/Threonine protein kinases active-site signature. 977 989 IPR008271 GO:0004672|GO:0006468
Gma18g02442 1136 SMART serkin_6 857 1109 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma18g02442 1136 SMART LRR_typ_2 230 254 IPR003591 -
Gma18g02442 1136 SMART LRR_typ_2 185 209 IPR003591 -
Gma18g02442 1136 SMART LRR_typ_2 667 690 IPR003591 -
Gma18g02442 1136 SMART LRR_typ_2 137 160 IPR003591 -
Gma18g02442 1136 SMART LRR_typ_2 161 184 IPR003591 -
Gma18g02442 1136 SMART LRR_typ_2 619 643 IPR003591 -
Gma18g02442 1136 SMART LRR_typ_2 303 327 IPR003591 -
Gma18g02442 1136 SMART LRR_typ_2 691 714 IPR003591 -
Gma18g02442 1136 SMART LRR_typ_2 255 279 IPR003591 -
Gma18g02442 1136 ProSiteProfiles Protein kinase domain profile. 857 1131 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma18g02442 1136 Pfam Protein kinase domain 860 1058 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma18g02442 1136 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RPK2 15 1135 - -
Gma18g02442 1136 Gene3D Ribonuclease Inhibitor 38 231 IPR032675 -
Gma18g02442 1136 SUPERFAMILY L domain-like 130 722 - -
Gma18g02442 1136 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 15 1135 - -
Gma18g02442 1136 Gene3D Phosphorylase Kinase; domain 1 820 932 - -
Gma18g02442 1136 Pfam Leucine rich repeat N-terminal domain 40 76 IPR013210 -
Gma18g02442 1136 Gene3D Ribonuclease Inhibitor 232 357 IPR032675 -
Gma18g02442 1136 Gene3D Ribonuclease Inhibitor 358 538 IPR032675 -
Gma18g02442 1136 Pfam Leucine rich repeat 164 222 IPR001611 GO:0005515
Gma18g02442 1136 Pfam Leucine rich repeat 621 680 IPR001611 GO:0005515
Gma18g02442 1136 Gene3D Transferase(Phosphotransferase) domain 1 933 1133 - -
Gma18g02442 1136 CDD STKc_IRAK 863 1131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g02442 Gma-Chr18 58447915 58451505 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g02442 26 1136 Receptor kinase-like Gene Family AT3G02130 62.898 0.0 1332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XV Gma18g02442 Pkinase 2.1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g02442 - - gmx:100803058 2189.85