Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g02407 ATGGGTTGCGCGAGCTCGAAGAAGACGGTCGCCGGAGCCGGTGATTCTACGCCGGAGGGGCCGTGCGTGGTGCCTTCAAGTTCTCGGAGGCGGAGCAATAATGGGTTGGGGAGAAACCAAAACGGCGTCGTCggggaggcgcgtgagggggaggcgcgtgaggAATGGAGCAAGGGGAGCTTGAGAGAGGGGAATGGGTCTGTGTCTTTAAGGTTGTCGTGTAGGTTtgtggaggctgagcagaatgcggctgggtggccaccttggcttacatctgttgctggggaagccattcaagggtgggtcccactcaaaacggattcttttgagagattggataagattggacaaggtacatatagcagtgtattccaagcacgcgaagttaaaactgggaggatggttgccctgaagaaggtgcactttgacaaatttcaagcagaaagcattaggttcatggcaagagaaatattaattctccgcacacttgaccacccaaacatcatgaaattggagggtataatcacttcaaaactatcaaatagcatataccttgtatttgaatatatggagcatgaccttgctggcctagtcgcttctcctgacataaagttcaccgactcacagattaagtgttacatgagacagctattaagtggaattgagcattgtcaccttaaaggtattatgcatcgagacattaaagtatctaatatattagtgaacaatgaaggtgttctcaagatagcagattttggattagccaatacccttgtcccaaatagtaagcaacccttaacaagtcgtgtggtgactctatggtatcgtcctcctgagaacttgttgggatcaacaaattatggagtttcagtggatctatggagtgttggttgtgtatttgctgaactttttctggggaagcccatccttaaggggagaactgaggttgaacaattacacaaaattttcaagctttgtggttctccaccagaggagttctggaaaaagaataagcttcctctggccacaatgtttaagcctcggactaattacaaaacttctcttaaggagcggtgtaggggttttcctgcaactgctgtaaacctactagagaccttactttccattgatccctctaaacgtgggactgcctcctctgccctcatgtctgagtatttcagcaccaagccatatgcttgtaatccatcactcctgccaaagtatccaccaagcaaagaaatggatgccaaaaattgggaagatgtgcgcaggaaaaagaatggaggtaaagtgagagaggccgtaacatcaaaaaggcaaagacaagtccacaaagtttcccatgaccatatcaatttcaacaaaccagctttgaaagaggaaatgcagaatgattctcaaaatgctgctccagatgatggtagggcacatgttacaaaaggaaaagtagcaggagctatgcataaagagcaaccaaagccttcatatgatgcgaagtcagaggctgcccaagtggtgaatggttgcaatggatacagtgtatactcaggaccatcaccagtctcgggatctagtggctttacatgggctaaaaggagaaaaccaaaagcttcatccatattgtcaaatggctcaataagaaaagtcagtgctctggatccaacctttgcaaaaggcacatatgttttaacAGAACATGGGATAGAAGTTTCAGAAAGGAAACATAGTTACAACACAAACCATCAGGATGTGACTTCCAACTATGTATCAAAAAAGTACCTGGCTCCTCGTGTTCAACAAAAATCATTTGATGTAGCTGATACATACAACTCAAATTATTAcatggactttgatttcacagataaaatggatgctttgatagatactcagggccacagaaaacatggtgAGCCTGTGGAGCCAAAAATAATCCCATCAGATAAAAATGATGAGATGTTGCATTGGAATGAACATAGTATGCGACAATGTCTTCGTAAATCGAGGTTTGGAAGAGaccaatga 2022 0.1024 MGCASSKKTVAGAGDSTPEGPCVVPSSSRRRSNNGLGRNQNGVVGEAREGEAREEWSKGSLREGNGSVSLRLSCRFVEAEQNAAGWPPWLTSVAGEAIQGWVPLKTDSFERLDKIGQGTYSSVFQAREVKTGRMVALKKVHFDKFQAESIRFMAREILILRTLDHPNIMKLEGIITSKLSNSIYLVFEYMEHDLAGLVASPDIKFTDSQIKCYMRQLLSGIEHCHLKGIMHRDIKVSNILVNNEGVLKIADFGLANTLVPNSKQPLTSRVVTLWYRPPENLLGSTNYGVSVDLWSVGCVFAELFLGKPILKGRTEVEQLHKIFKLCGSPPEEFWKKNKLPLATMFKPRTNYKTSLKERCRGFPATAVNLLETLLSIDPSKRGTASSALMSEYFSTKPYACNPSLLPKYPPSKEMDAKNWEDVRRKKNGGKVREAVTSKRQRQVHKVSHDHINFNKPALKEEMQNDSQNAAPDDGRAHVTKGKVAGAMHKEQPKPSYDAKSEAAQVVNGCNGYSVYSGPSPVSGSSGFTWAKRRKPKASSILSNGSIRKVSALDPTFAKGTYVLTEHGIEVSERKHSYNTNHQDVTSNYVSKKYLAPRVQQKSFDVADTYNSNYYMDFDFTDKMDALIDTQGHRKHGEPVEPKIIPSDKNDEMLHWNEHSMRQCLRKSRFGRDQ 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g02407 673 ProSitePatterns Protein kinases ATP-binding region signature. 115 138 IPR017441 GO:0005524
Gma18g02407 673 PANTHER CYCLIN-DEPENDENT KINASE 6 567 - -
Gma18g02407 673 PANTHER CELL DIVISION PROTEIN KINASE 6 567 - -
Gma18g02407 673 Pfam Protein kinase domain 109 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma18g02407 673 MobiDBLite consensus disorder prediction 21 40 - -
Gma18g02407 673 MobiDBLite consensus disorder prediction 425 446 - -
Gma18g02407 673 Gene3D Phosphorylase Kinase; domain 1 96 191 - -
Gma18g02407 673 CDD STKc_CDK9_like 109 393 - -
Gma18g02407 673 Gene3D Transferase(Phosphotransferase) domain 1 192 433 - -
Gma18g02407 673 SUPERFAMILY Protein kinase-like (PK-like) 103 398 IPR011009 -
Gma18g02407 673 ProSiteProfiles Protein kinase domain profile. 109 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma18g02407 673 ProSitePatterns Serine/Threonine protein kinases active-site signature. 229 241 IPR008271 GO:0004672|GO:0006468
Gma18g02407 673 SMART serkin_6 109 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma18g02407 673 MobiDBLite consensus disorder prediction 1 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g02407 Gma-Chr18 58176483 58183037 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g02407 101 444 Core Cell Cycle Gene Families AT5G10270 46.944 1.39e-105 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Gma18g02407 Pkinase 1.4e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g02407 - - gmx:100796152 1332.78