Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g02404 ATGGATGGACCAGCTGGCCGAGGTGGTGCTGGCCTGGACATGTTTCTACCAAATTATAAATTGGGAAAAACACTCGGGATTGGATCTTTTGGCAAGGTGAAAATTGCAGAACATGTGTTGACTGGCCATAAGGTTGCGATCAAGATCCTTAACCGACGCAAGATAAAGAACATGGAAATGGAAGAAAAAGTGAGAAGAGAAATCAAAATTTTAAGATTGTTCATGCATCCTCACATTATTCGACTTTATGAAGTCATAGAAACTCCAACTGACATATATGTTGTCATGGAGTATGTGAAGTCTGGAGAGCTTTTCGATTACATAGTAGAGAAGGGTAGGTTGCAGGAAGATGAAGCTCGTAATTTTTTTCAGCAGATAATCTCTGGGGTGGAGTACTGTCACAGGAATATGGTGGTTCATAGAGATTTGAAGCCTGAGAATTTACTTTTGGACTCCAAATGTAATGTCAAGATTGCTGATTTTGGCTTGAGCAACATCATGCGTGATGGTCACTTTCTTAAAACAAGTTGTGGAAGCCCTAACTATGCAGCTCCTGAGGTTATCTCTGGGAAATTGTATGCTGGACCTGAAGTGGATGTCTGGAGCTGTGGTGTAATTTTATATGCCCTTCTTTGTGGCACCCTTCCTTTTGATGATGAAAATATTCCAAATCTCTTCAAGAAAATAAAGGGTGGGATTTACACTCTTCCCAGTCATCTATCACCCGGTGCTAGAGATTTGATACCAGGGATGCTTGTGGTTGACCCTATGAGGAGAATGACCATACCTGAGATCCGTCAACACCCATGGTTCCAAGCTCGACTTCCACGTTATTTAGCTGTGCCACCACCAGATACAATGCAACAGGCCAAAAAGATTGATGAGGAGATCCTTCAGGAAGTGGTGAAAATGGGATTTGACAGGAATCAATTGGTTGAATCTCTTGGGAACAGGATACAAAATGAGGGTACTGTGGCATACTATTTGTTATTGGACAACCGATTTCGTGTTTCCAGTGGCTATCTTGGAGCTGAGTTTCAAGAGACCATGgattccggttttaatcaaatgcattccagtgaacttgcttcttcagttgttggaaaccgctttccaggctacatggaatatccaggagtaggatcgaggcaacagttccctgttgaaaggaaatgggcccttgggcttcagtctcgagcccatcctcgtgaaataatgactgaggttcttaaagctttgcaagaattaaatgtttgttggaagaagattggtcactacaacatgaagtgtaggtgggttgctggcattcctggtcaccacgaaggaatggttaacaataatgtgcatagtaatcattactttggagatgattccaacattattgagaatgatgctgtttctacttcaaatgtggtcaagtttgaagtgcagctttacaaaacccgggaagaaaagtatctgcttgatcttcaaagggtgcagggtccacagtttcttttcttggatctATGTGCTGCTTTCCTTGCACAGCTTCGTGTCCTCTAG 1545 0.2984 MDGPAGRGGAGLDMFLPNYKLGKTLGIGSFGKVKIAEHVLTGHKVAIKILNRRKIKNMEMEEKVRREIKILRLFMHPHIIRLYEVIETPTDIYVVMEYVKSGELFDYIVEKGRLQEDEARNFFQQIISGVEYCHRNMVVHRDLKPENLLLDSKCNVKIADFGLSNIMRDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPGMLVVDPMRRMTIPEIRQHPWFQARLPRYLAVPPPDTMQQAKKIDEEILQEVVKMGFDRNQLVESLGNRIQNEGTVAYYLLLDNRFRVSSGYLGAEFQETMDSGFNQMHSSELASSVVGNRFPGYMEYPGVGSRQQFPVERKWALGLQSRAHPREIMTEVLKALQELNVCWKKIGHYNMKCRWVAGIPGHHEGMVNNNVHSNHYFGDDSNIIENDAVSTSNVVKFEVQLYKTREEKYLLDLQRVQGPQFLFLDLCAAFLAQLRVL 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g02404 514 Pfam UBA/TS-N domain 293 329 IPR015940 -
Gma18g02404 514 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 8 513 - -
Gma18g02404 514 SUPERFAMILY Protein kinase-like (PK-like) 16 286 IPR011009 -
Gma18g02404 514 Gene3D Kinase associated domain 1, KA1 395 512 - -
Gma18g02404 514 ProSitePatterns Protein kinases ATP-binding region signature. 25 48 IPR017441 GO:0005524
Gma18g02404 514 SUPERFAMILY KA1-like 328 513 IPR028375 -
Gma18g02404 514 SMART uba_6 294 331 IPR015940 -
Gma18g02404 514 CDD AMPKA_C 389 511 - -
Gma18g02404 514 SMART serkin_6 19 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma18g02404 514 ProSiteProfiles Protein kinase domain profile. 19 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma18g02404 514 Pfam Kinase associated domain 1 471 513 IPR001772 -
Gma18g02404 514 PANTHER SERINE/THREONINE KINASE 8 513 - -
Gma18g02404 514 ProSiteProfiles Kinase associated domain 1 (KA1) profile. 465 513 IPR001772 -
Gma18g02404 514 CDD STKc_AMPK_alpha 16 271 - -
Gma18g02404 514 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 292 332 IPR015940 -
Gma18g02404 514 CDD UBA_SnRK1_plant 293 333 - -
Gma18g02404 514 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Gma18g02404 514 Gene3D Transferase(Phosphotransferase) domain 1 11 350 - -
Gma18g02404 514 Pfam Protein kinase domain 19 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g02404 Gma-Chr18 58145895 58155457 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g02404 19 271 CBL-interacting serine-threonine protein kinases AT4G24400 52.362 2.28e-92 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_AMPK Gma18g02404 Pkinase 2.9e-80 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g02404 K07198 - gmx:100796687 1041.57