Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g02397 ATGGAAGGATCATCAGGTGTGAGGAAAGGCGCATGGAGTCAATTTGAAGATGACCTTCTCAGAGATTGCGTGAACCTTCATGGGGAAGGAAAATGGCACCTTGTTCCTCAAAGAGCAGggttgaacagatgccgcaagagttgtagattaagatggttgaaCTATCTAAAACCAAATATCAAGCGGGGAGATTTTAATGAAGATGAGGTTGATTTGATGATCAGATTGCATAAGCTTTTGGGAAACAGATGGTCCCTAATTGCTGGGAGACTTCCGGGAAGAACTTCAAATGATGTTAAGAACTACTGGAACGCCTACATGCGCCGTAAAGTTCACTCTCACAACAAAGACAACAAAATAAAGAAGCAAGAGACCAAATCAACAGTGAAACCCCACGAAGTGATTAAGCCTATTCCTCGAGTTTTAACAAAAACATCCCCATGGTTGCAACGGAAATTCATTAATAGTCCCAAAGTTGGTGTTAGTGAAGAAGGTGCAACATCATCAGAGAATTGGTGGGAGACATTGTTAGCTGACAAGGAAGATAATGCAGTATTTAACAACAACAACAACACGTGCTTCTTTGGTGGGGTGCATGGAGAGCTTAACCTTTGGAACGAAGAGCTTACTTCAATTGATTTTGACTTTGTTACACAAGGTGAACTTGGAGGGATTGTGAACTTTCAAAATCCATAG 696 0.3879 MEGSSGVRKGAWSQFEDDLLRDCVNLHGEGKWHLVPQRAGLNRCRKSCRLRWLNYLKPNIKRGDFNEDEVDLMIRLHKLLGNRWSLIAGRLPGRTSNDVKNYWNAYMRRKVHSHNKDNKIKKQETKSTVKPHEVIKPIPRVLTKTSPWLQRKFINSPKVGVSEEGATSSENWWETLLADKEDNAVFNNNNNTCFFGGVHGELNLWNEELTSIDFDFVTQGELGGIVNFQNP 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g02397 231 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
Gma18g02397 231 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Gma18g02397 231 Pfam Myb-like DNA-binding domain 62 106 IPR001005 -
Gma18g02397 231 PANTHER TRANSCRIPTION FACTOR MYB113-RELATED 6 150 - -
Gma18g02397 231 CDD SANT 11 56 IPR001005 -
Gma18g02397 231 Gene3D - 9 61 - -
Gma18g02397 231 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 4 56 IPR017930 -
Gma18g02397 231 CDD SANT 65 107 IPR001005 -
Gma18g02397 231 SMART sant 8 58 IPR001005 -
Gma18g02397 231 SMART sant 61 109 IPR001005 -
Gma18g02397 231 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Gma18g02397 231 Gene3D - 64 136 - -
Gma18g02397 231 SUPERFAMILY Homeodomain-like 6 103 IPR009057 -
Gma18g02397 231 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 111 IPR017930 -
Gma18g02397 231 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 6 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g02397 Gma-Chr18 58098109 58099824 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g02397 2 143 MYB Transcription Factor Family AT1G66370 61.224 3.85e-56 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma18g02397 Myb_DNA-binding 3.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g02397 - K16166 gmx:100778957 382.874
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g02397 18 58098109 58099824 Gma09g02163 09 47068899 47070222 GST