Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g02369 ATGGGTTACAGTCAATGGGCTCAGAATTGCAGGCCATACAATTTTCATGCCAAACCGGGTCAACTCGTGCCACCCATCACCACAACTATAACAAAATCAGCAGCATCAACAGAAGCAGAAGAAGCAGATGTTAGAGCCATGGACATAACCCCAACAACAACGATCATCAACACCACCACCACTCCCAGTGCAGCAAAATCCCCGGAACATGAAACAGAAACACCGACCAGGATCACCACCCCCATCACTCCCACAACGACAAAAACCTTATCTTTCTCGAATGGTGTCCTCAAACGCCACCACCACCACCACCTCCACCACCCTATGCCTGCGGTGGTTACCTACAAAGAATGCCTCAAAAACCACGCCGCCAACTTGGGTGGCCACGCTCTAGACGGCTGCGGCGAGTTCATGCCCTCTCCGACCGCCACCGCCGCCGACCCCAGCTCCATAAAATGCGCCGCCTGCGGCTGCCACCGCAACTTCCACCGCCGCGAGCCGGAGGACCCCCCCATCACCTCCAACACCACGCACGTCATCGAGTACCAGCCCCACCACCGCCACCACCCTCCGCCGCCGCTTCATGCGGCGGCGGCAGCACGCAGCCCCAATTCCGCTTCCCCGCCGCCGATCTCCTCCTCTTACTATCCCTCCGCGCCGCACATGCTCCTCGCCCTCTCCGCCGGGATAGCGGCTCCGCCGGAGAGCACCGCAGCGccttccgccgcgctcagcagaaagcgttttcgaacgaaTATTATTGATGATAATGATGCAAATGGGGGTGATGTCAAGGTTTTTGAAAACCCTAACAACAACCGTGGTAGTGATAGTGGTGGTGGTGAAGATCCTGCTGAAGATCCTAGTCGTAATcactatggtggggtgaatgttggtgctaacgggtcttcttctagttcttga 924 0.5173 MGYSQWAQNCRPYNFHAKPGQLVPPITTTITKSAASTEAEEADVRAMDITPTTTIINTTTTPSAAKSPEHETETPTRITTPITPTTTKTLSFSNGVLKRHHHHHLHHPMPAVVTYKECLKNHAANLGGHALDGCGEFMPSPTATAADPSSIKCAACGCHRNFHRREPEDPPITSNTTHVIEYQPHHRHHPPPPLHAAAAARSPNSASPPPISSSYYPSAPHMLLALSAGIAAPPESTAAPSAALSRKRFRTNIIDDNDANGGDVKVFENPNNNRGSDSGGGEDPAEDPSRNHYGGVNVGANGSSSSS 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g02369 307 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 47 256 - -
Gma18g02369 307 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 115 166 IPR006456 -
Gma18g02369 307 MobiDBLite consensus disorder prediction 57 87 - -
Gma18g02369 307 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 114 166 IPR006456 -
Gma18g02369 307 MobiDBLite consensus disorder prediction 254 307 - -
Gma18g02369 307 Pfam ZF-HD protein dimerisation region 113 167 IPR006456 -
Gma18g02369 307 MobiDBLite consensus disorder prediction 183 213 - -
Gma18g02369 307 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 47 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g02369 Gma-Chr18 57808294 57810009 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g02369 47 253 ZF-HD Transcription Factor Family AT5G15210 51.923 5.15e-50 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Gma18g02369 ZF-HD_dimer 1.9e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g02369 - - gmx:100786999 295.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g02369 18 57808294 57810009 Gma09g02187 09 47341864 47342862 GST
Gma13g00462 13 16859098 16860021 Gma18g02369 18 57808294 57810009 PCT
Gma19g00198 19 2531998 2533613 Gma18g02369 18 57808294 57810009 PCT
Gma18g02369 18 57808294 57810009 Gma13g00462 13 16859098 16860021 PCT
Gma18g02369 18 57808294 57810009 Gma19g00198 19 2531998 2533613 PCT