Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g02367 atgggaagaccaccttgttgtgacaaagaaggggtcaagaaagggccttggactcctgaagaagacatcatattggtgtcttatattcaggaacatggtcctggaaattggagggcagttcctgccaaaacagGGTTGTCAAGATGCAGCAAGAGTTGCAGACTTAGATGGACTAATTACCTGAGGCCAGGAATCAAACGGGGCAACTTCACAGAACAAGAGGAGAAGATGATAATCCATCTTCAAGATCTTTTAGGAAACAGATGGGCTGCAATAGCTTCATACCTTCCACAGAGAACAGACAATGACATAAAGAACTATTGGAACACCCATTTGAGAAAGAAGCTGAAGAAGATGCAAGTAGGTTGTGAAGGTGGTAGCTTTGGAGAAGGGTTTTCAGCCTCAAGGCAAATCCCTAGAGGCCAGTGGGAAAGAAGGCTCCAAACTGATATCCAAATGGCAAAGAGAGCCCTCAGTGAAGCTCTTTCACCAGAGAAGCCATCTTGTAATTTATCTGCCTCAAACTCAAACCCTTCAGATAGTAGCAGCTCCTTCTCTTCCACAAAACCAACAACAACACAAACTGTGTGCTATGCCTCAAGTGCTGACAACATAGCTAGAATGCTAAAGGGTTGGATGAAAAACCCACCAAAGTCCTCAAGAACAAACTCATCATCTGTGACTCAGAACTCCTTCAACAACTTTGCTGCAGCAGGTGCTGATACTGCTTCTAGTATTGGAGCAAAGGGACCACCAAGCAGTGCTGAATTGTCTGAAAACAATTTTGAATCATTGTTTGATTTTGATCAGTCTTTGGAGTCTTCAAACTCTGATGAATTCTCTCGGTCATTGTCTCCTGAGGCCACTGTTTTGCAAGATGAAAGCAAGCCTGATGTTATTGGTGCAGAAATTATGCCATTCTCTTTGCTTGAGAAATGGCTTCTTGATGAGGCTGGTTGCCAAGAGAAATTAGTTGGTTGTGGTGATGATGCCAAGTTTTTCTAA 1005 0.3721 MGRPPCCDKEGVKKGPWTPEEDIILVSYIQEHGPGNWRAVPAKTGLSRCSKSCRLRWTNYLRPGIKRGNFTEQEEKMIIHLQDLLGNRWAAIASYLPQRTDNDIKNYWNTHLRKKLKKMQVGCEGGSFGEGFSASRQIPRGQWERRLQTDIQMAKRALSEALSPEKPSCNLSASNSNPSDSSSSFSSTKPTTTQTVCYASSADNIARMLKGWMKNPPKSSRTNSSSVTQNSFNNFAAAGADTASSIGAKGPPSSAELSENNFESLFDFDQSLESSNSDEFSRSLSPEATVLQDESKPDVIGAEIMPFSLLEKWLLDEAGCQEKLVGCGDDAKFF 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g02367 334 CDD SANT 69 112 IPR001005 -
Gma18g02367 334 Gene3D - 69 124 - -
Gma18g02367 334 CDD SANT 16 61 IPR001005 -
Gma18g02367 334 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Gma18g02367 334 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gma18g02367 334 SMART sant 66 114 IPR001005 -
Gma18g02367 334 SMART sant 13 63 IPR001005 -
Gma18g02367 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Gma18g02367 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Gma18g02367 334 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gma18g02367 334 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gma18g02367 334 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gma18g02367 334 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 327 - -
Gma18g02367 334 MobiDBLite consensus disorder prediction 159 193 - -
Gma18g02367 334 MobiDBLite consensus disorder prediction 165 193 - -
Gma18g02367 334 Gene3D - 13 66 - -
Gma18g02367 334 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g02367 Gma-Chr18 57773473 57775155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g02367 1 317 MYB Transcription Factor Family AT5G62470 50.418 7.94e-101 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma18g02367 Myb_DNA-binding 4.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g02367 K09422 - gmx:778080 639.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g02367 18 57773473 57775155 Gma09g02190 09 47375727 47377396 GST
Gma13g00463 13 16919054 16920379 Gma18g02367 18 57773473 57775155 PCT
Gma19g00195 19 2474702 2476609 Gma18g02367 18 57773473 57775155 PCT
Gma18g02367 18 57773473 57775155 Gma13g00463 13 16919054 16920379 PCT
Gma18g02367 18 57773473 57775155 Gma19g00195 19 2474702 2476609 PCT