Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g02361 ATGGCCTTCCTACCTTCTCACGGTTTCACGTTTAACACTACTCATGAAGAAGATCACTGCCACTTCCCTCCAACCTCTCTCGACGCCTTCCCCTCTTTGCCACCCCAGCACTTTCAAGGGGGTGCACCTTTCATGTTGAAGCGGTCCATGTCGTTATCAGGCATAGAGAACAAGTGCAATGAAGTACATGGAGATGATGAGTTATCCGATGATGGGGTCTTCCAGAGTGGGGAGAAGAAGAAGAGGTTGAATTTGGAACAGGTGAAGGCCCTTGAGAAGAGTTTTGATCAGGGGAACAAACTTGAGCCAGAAAGGAAAGTGCAGTTAGCTAAGGCTTTGGGGTTGCAGCCAAGACAAGTTGCCATATGGTTTCAGAATAGAAGGGCTAGATGGAAAACCAAGCAATTGGAGAAAGAATATGAAGTCCTCAAGAAGCAGTTTGAAGCAGTCAAGGCTGATAATGATGTTCTTAAGGTTCGGAACCAGAAACTACAGGCAGAGTTACAAGCTGTAAAAAGTAGGGATTGTTGTGAAGCTGGAATAATCAGCCTTAAGAAAGAAACTGAGGGTTCATGGAGCAATGGAAGTGATAACAACTCAGATCTAAATTTAGATCCCTCAAGAGCACTAGGTTTGAACAGTCCTATATCTTCTCATAACATTAAAAACCTACTACCAAATTCGTTAAAGCCAAACAGCATAACCCAACTCCTTCAAGATGATGGCTTGTGCAACATGTTTCACAACATTGATGCACCACAGAACTTTTGGCCCAGGCCTGATCAGCACCACCAGCGTTTCCATTGA 807 0.4436 MAFLPSHGFTFNTTHEEDHCHFPPTSLDAFPSLPPQHFQGGAPFMLKRSMSLSGIENKCNEVHGDDELSDDGVFQSGEKKKRLNLEQVKALEKSFDQGNKLEPERKVQLAKALGLQPRQVAIWFQNRRARWKTKQLEKEYEVLKKQFEAVKADNDVLKVRNQKLQAELQAVKSRDCCEAGIISLKKETEGSWSNGSDNNSDLNLDPSRALGLNSPISSHNIKNLLPNSLKPNSITQLLQDDGLCNMFHNIDAPQNFWPRPDQHHQRFH 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g02361 268 Pfam Homeobox associated leucine zipper 134 173 IPR003106 GO:0006355|GO:0043565
Gma18g02361 268 Gene3D - 83 132 - -
Gma18g02361 268 PRINTS Lambda-repressor HTH signature 105 114 IPR000047 GO:0003677
Gma18g02361 268 PRINTS Lambda-repressor HTH signature 114 130 IPR000047 GO:0003677
Gma18g02361 268 Pfam Homeodomain 79 132 IPR001356 GO:0003677
Gma18g02361 268 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 1 268 - -
Gma18g02361 268 SUPERFAMILY Homeodomain-like 70 136 IPR009057 -
Gma18g02361 268 SMART HOX_1 77 138 IPR001356 GO:0003677
Gma18g02361 268 ProSitePatterns 'Homeobox' domain signature. 109 132 IPR017970 GO:0000981|GO:0006355
Gma18g02361 268 ProSiteProfiles 'Homeobox' domain profile. 74 134 IPR001356 GO:0003677
Gma18g02361 268 CDD homeodomain 79 135 IPR001356 GO:0003677
Gma18g02361 268 Coils Coil 126 174 - -
Gma18g02361 268 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 268 IPR045224 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g02361 Gma-Chr18 57688572 57691294 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g02361 1 261 Homeobox Transcription Factor Family AT3G01220 49.818 3.51e-83 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gma18g02361 Homeodomain 5.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g02361 K09338 - gmx:100783460 536.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g02361 18 57688572 57691294 Gma09g02195 09 47463056 47465180 GST
Gma13g00471 13 17091196 17094065 Gma18g02361 18 57688572 57691294 PCT
Gma19g00186 19 2259995 2263829 Gma18g02361 18 57688572 57691294 PCT
Gma18g02361 18 57688572 57691294 Gma13g00471 13 17091196 17094065 PCT
Gma18g02361 18 57688572 57691294 Gma19g00186 19 2259995 2263829 PCT