Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g02327 ATGGGTGAGAAAGATGATGAGTTTGGGTTGAGTTTGAGTTTGAGTTTGGGGGGAGTGAATCAACAACAACAACCCCCTTCTTTGAATCATATGCACCAGCCTCAACAACAACAACCTGTTCCCATGAATCACAATAAGACTCTCTTTGGTGATTTGTTTCAGTTACCAGCAGATCGGAGCTCCGATATGGTACGAGGAATCGACGTTAATTCGGCGGCGGAGTACGATGGCGTTTCCTCGCCGAACAGCGCCGTCTCGAGCGTGAGCGGCGGCGGCAAGCAGAGCGAGAGGGACGACGATAATGCCGCCGCCGTGGCTGGTGAGAGGACCTCGTGCTCGCGAGGGAGCGACGACGATGACGGTGGTGGCAGCGACGCCGCGAGGAAGAAGCTGAGGCTGACGAAAGAACAGTCCATGGTGTTGGAAGAAACGTTCAAGGAGCACAACACCCTGAATCCGAAACGGAAGCAAGCGTTGGCAGAGGAGTTGAATCTGAAGCCCAGACAAGTAGAGGTGTGGTTTCAGAACAGAAGAGCAAGGACTAAGCTGAAGCAAACTGAAGTGGATTGTGAATACTTAAAGAAATGCTGTGAGAATTTAACTGAAGAGAATAGAAGGTTGCACAAGGAGGTTCAAGAGCTTAGGGCACTGAAATTATCCCCACAAATGTACATGCATATGAACCCTCCCACCACTCTTACAATGTGCCCTTCTTGTGAGCGTACTCACTCCTCTGCATCCTCCTCCCCTGCTACCATCCACTCAACAGTGGCGGCGGCCACCTCTAGCAATTGCAAACTGCTTGGTGCAAACATCCGGCGGCCGGTGCCCGTCAACACTTGGCCATTTGAAGGCCCAATTCCCCGGCCATAA 873 0.52 MGEKDDEFGLSLSLSLGGVNQQQQPPSLNHMHQPQQQQPVPMNHNKTLFGDLFQLPADRSSDMVRGIDVNSAAEYDGVSSPNSAVSSVSGGGKQSERDDDNAAAVAGERTSCSRGSDDDDGGGSDAARKKLRLTKEQSMVLEETFKEHNTLNPKRKQALAEELNLKPRQVEVWFQNRRARTKLKQTEVDCEYLKKCCENLTEENRRLHKEVQELRALKLSPQMYMHMNPPTTLTMCPSCERTHSSASSSPATIHSTVAAATSSNCKLLGANIRRPVPVNTWPFEGPIPRP 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g02327 290 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT3 4 282 - -
Gma18g02327 290 MobiDBLite consensus disorder prediction 72 135 - -
Gma18g02327 290 ProSitePatterns 'Homeobox' domain signature. 159 182 IPR017970 GO:0000981|GO:0006355
Gma18g02327 290 SUPERFAMILY Homeodomain-like 115 185 IPR009057 -
Gma18g02327 290 MobiDBLite consensus disorder prediction 14 44 - -
Gma18g02327 290 MobiDBLite consensus disorder prediction 1 46 - -
Gma18g02327 290 Pfam Homeodomain 128 182 IPR001356 GO:0003677
Gma18g02327 290 SMART halz 184 227 IPR003106 GO:0006355|GO:0043565
Gma18g02327 290 CDD homeodomain 128 185 IPR001356 GO:0003677
Gma18g02327 290 Gene3D - 121 189 - -
Gma18g02327 290 Coils Coil 197 217 - -
Gma18g02327 290 ProSiteProfiles 'Homeobox' domain profile. 124 184 IPR001356 GO:0003677
Gma18g02327 290 PANTHER - 4 282 - -
Gma18g02327 290 SMART HOX_1 126 188 IPR001356 GO:0003677
Gma18g02327 290 Pfam HD-ZIP protein N terminus 1 98 IPR006712 GO:0005634
Gma18g02327 290 MobiDBLite consensus disorder prediction 75 92 - -
Gma18g02327 290 MobiDBLite consensus disorder prediction 112 135 - -
Gma18g02327 290 Pfam Homeobox associated leucine zipper 184 218 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g02327 Gma-Chr18 57087634 57091355 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g02327 28 241 Homeobox Transcription Factor Family AT3G60390 60.082 3.20e-86 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gma18g02327 HD-ZIP_N 1.2e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g02327 K09338 - gmx:100819624 546.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g02327 18 57087634 57091355 Gma18g02327 18 57087634 57091355 ECH
Gma18g02327 18 57087634 57091355 Gma09g02214 09 47670481 47673994 GST
Gma03g01077 03 35497912 35500847 Gma18g02327 18 57087634 57091355 PCT
Gma07g01022 07 11985920 11989531 Gma18g02327 18 57087634 57091355 PCT