LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma18g02282	ATGATTGTCTGCGTCGCCGTCGTCGGTCACCAGAACAATCCGCTGTACATACAGAGCTTCACGGAGGCCGATGATGCTCTCAAGCTCCACCACATCGTCCATTGCTCGCTCGATGTGGTCGACGAGCGAGTGAACAATCCTAAAAAGTCTGGGCCGATGCTTAATGAGACGTTTTTGGGACTGCTTTATCCTATTGAAAACTACAAAGTATATGGATATCTGACTAATACGAAGGTGAAATTTATCTTGGTGACCACGGATCTGGATGTTAAAGATGCGGATGTAAGGAATTTTTTCAGGAGGTTCCATGCCGCATATGTAGATGCAGTTTCAAACCCATTCCATGTACCAGGCAAAAAGATAACCTCCAGAACTTTTGCAGAAAGAGTGAGCACAATTGTCAAGTCATTTGGCTTGAGTTCTGCTGGGGCGAAAAGGATTTTACGTGATAAGCAATGCATAGTTCTCCGAATATTTAAAGATCACACGCACACAGTTACGCTCTTCAAATCTATCTCTTCTCAGCGATTCTTGCTTCAAGTTCCAGAAATGGGTGTGGCTCAAAACATTCCCGATGCGGAGGAGGGAACCTTGGAGATTGGAATGGAATACAGAACTGTTTCTGGAGTTGCTGGGCCATTGGTCATTCTTGATAAAGTTAAGGGACCCAAGTTTCAAGAGATTGTTAACATTCGCTTAGGAGATGGTACTACTCGGCGTGGACAAGTGCTAGAAGTTGATGGTGAAAAGGCTGTTGTTCAGGTCTTTGAGGGTACATCTGGGATTGACAATAAATTTACAACTGTGCAATTTACTGGAGAGGTGTTAAAAACTCCAGTATCATTGGACATGCTTGGCCGCATATTCAATGGTTCTGGAAAACCAATTGATAATGGTCCACCCATTTTACCTGAGGCTTACTTGGACATATCAGGAAGTTCCATCAACCCTAGTGAGAGAACCTATCCAGAGGAGATGATACAGACAGGAATATCTACCATTGATGTCATGAATTCTATTGCTAGAGGTCAAAAGATCCCTCTATTCTCAGCTGCTGGTCTCCCCCATAATGAAATTGCTGCACAGATATGCCGTCAGGCTGGCTTAGTCAAGCGACTAGAAAAGTCTGATAATCTTCTCGAGGGTGGAGGAGAAGAGGACAATTTTGCCATTGTGTTTGCAGCTATGGGAGTTAACATGGAGACTGCACAGTTTTTCAAACGTGACTTTGAGGAAAATGGCTCGATGGAGAGAGTGACCCTTTTCCTTAATCTGGCAAATGATCCTACGATTGAGCGTATCATCACTCCTCGTATTGCTCTTACTACTGCTGAATATTTGGCATATGAATGTGGCAAGCATGTTCTTGTGATACTAACTGATATGAGTTCTTATGCTGATGCTCTTCGTGAGGTATCTGCTGCCCGAGAAGAAGTACCTGGTAGACGTGGGTATCCCGGCTACATGTATACAGATCTTGCAACAATATACGAACGTGCTGGAAGAATTGAGGGGCGAAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCTAATGATGATATTACGCATCCAACTCCTGATCTTACAGGATATATTACTGAGGGACAGATATATATCGACAGACAGTTGTATAACAGGCAGATATATCCACCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAGAGTGCCATTGGTGAGGGAATGACACGAAAGGATCATTCTGATGTGTCCAACCAGCTCTATGCAAATTATGCCATTGGAAAGGATGTCCAGGCAATGAAAGCGGTGGTTGGAGAAGAAGCACTTTCATCTGAGGACCTGCTGTATTTGGAATTTTTGGAGAAGTTTGAGAGGAAGTTTGTTGCCCAAGGAGCATACGATACACGCAATATCTTCCAGTCACTAGATCTTGCATGGACTTTGCTTCGGATTTTCCCTCGCGAGCTTCTCCACCGTATTCCTGCAAAGACTCTTGATCAGTTCTACAGCCGAGATGCCAGTAACTGA	2019	0.4373	MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPMLNETFLGLLYPIENYKVYGYLTNTKVKFILVTTDLDVKDADVRNFFRRFHAAYVDAVSNPFHVPGKKITSRTFAERVSTIVKSFGLSSAGAKRILRDKQCIVLRIFKDHTHTVTLFKSISSQRFLLQVPEMGVAQNIPDAEEGTLEIGMEYRTVSGVAGPLVILDKVKGPKFQEIVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKSDNLLEGGGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLYNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLEKFERKFVAQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDQFYSRDASN	672

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma18g02282	672	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	277	567	IPR027417	-
	Gma18g02282	672	Pfam	ATP synthase alpha/beta family, beta-barrel domain	207	273	IPR004100	GO:0046034\|GO:1902600
	Gma18g02282	672	CDD	TRAPPC2L	3	134	IPR044760	GO:0006888
	Gma18g02282	672	Hamap	V-type ATP synthase beta chain [atpB].	201	670	IPR022879	-
	Gma18g02282	672	ProSitePatterns	ATP synthase alpha and beta subunits signature.	552	561	IPR020003	GO:0005524
	Gma18g02282	672	TIGRFAM	V-ATPase_V1_B: V-type ATPase, B subunit	203	670	IPR005723	GO:0033180\|GO:0046961\|GO:1902600
	Gma18g02282	672	CDD	V_A-ATPase_B	275	563	-	-
	Gma18g02282	672	PANTHER	V-TYPE PROTON ATPASE SUBUNIT B1-RELATED	186	672	-	-
	Gma18g02282	672	CDD	ATP-synt_V_A-type_beta_N	203	274	-	-
	Gma18g02282	672	Pfam	ATP synthase alpha/beta family, nucleotide-binding domain	330	561	IPR000194	GO:0005524
	Gma18g02282	672	SUPERFAMILY	SNARE-like	2	137	IPR011012	-
	Gma18g02282	672	CDD	ATP-synt_V_A-type_beta_C	571	665	-	-
	Gma18g02282	672	Pfam	Sedlin, N-terminal conserved region	7	135	IPR006722	GO:0006888
	Gma18g02282	672	Gene3D	-	1	141	-	-
	Gma18g02282	672	Gene3D	-	212	672	-	-
	Gma18g02282	672	PANTHER	V-TYPE PROTON ATPASE SUBUNIT B	186	672	IPR022879	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma18g02282	Gma-Chr18	56508326	56521051	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma18g02282	183	672	Primary Pumps ATPases(2)	AT4G38510	95.918	0.0	959

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma18g02282	K02147		-	gmx:100804483	965.296