Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g02272 ATGGAGAATTCATGGATGGACTTGCTTTCTCAATGGGAAACGGGTGATGATGATTTATTCATTAATCAAAGCCACGTGATCTCTTTCAATGAAGAAAAGTCCCCCAAAGGCATGATTTTTCAGCAACAAGTTTTTTCTCCCAAAAGTAAACTCTCTTCCTCTTCTTCTTTCCTTCAAAGCAACTTGAAATCTTGCTCATCATTTTCAACGGGTGGTTATGTATTGTCTTTTGATAATAACCATATTGTTGAACCACGTTACCCTCAAAACCCCTTCTCTAAAAGCGTGGCACAAAGCCATTGCGTTGAGCCAAAGGCGTTCCCACGAACAAGGCCACGAGTTCACATATTGGCCGAGAGAAAAAGGAGAGAGGAATTGAATAAGAGCATCGTGGCACTTTCAGCCACCATTCTTGGGTTTAAAAAGACAGACAAGGCAAATGTAGTACGTGAAGCTGTCAAATATGTGAAACAACTTGAAGAACGTGTGAACGAGCTAGAAAATCAAAAGAGAAAGGAAGGTGTGAATTCAATAATTCTCACCAAGAAAACGCCACTCTCCATAAATAATATTGATCAAGCCATCACTCATGGATGTGTGGATGTGGAAGAAGAAGTCCTCGAGGTGAAAGTAACTGTTTTAGATAAGGAATTGCTCATTGGAATTTATTGTGAGAAACAAAGGCAGACAATGCTCAAAATATTGTCATTGCTTCATGATCTCCATCTTTCTATAACCCCTACTAGCGTATTGCCATTTGGAACTTCCACTCTTAAAATTACCATTATCGCTCAGATGGATGACGAATATAACATGATAATTGATGATCTAGTAAAAGCACTGCGGCAACGCATATTGAAGTCACAGGATATGCAAAAGTGA 882 0.3923 MENSWMDLLSQWETGDDDLFINQSHVISFNEEKSPKGMIFQQQVFSPKSKLSSSSSFLQSNLKSCSSFSTGGYVLSFDNNHIVEPRYPQNPFSKSVAQSHCVEPKAFPRTRPRVHILAERKRREELNKSIVALSATILGFKKTDKANVVREAVKYVKQLEERVNELENQKRKEGVNSIILTKKTPLSINNIDQAITHGCVDVEEEVLEVKVTVLDKELLIGIYCEKQRQTMLKILSLLHDLHLSITPTSVLPFGTSTLKITIIAQMDDEYNMIIDDLVKALRQRILKSQDMQK 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g02272 293 Coils Coil 149 176 - -
Gma18g02272 293 Gene3D - 109 178 IPR036638 GO:0046983
Gma18g02272 293 PANTHER BHLH TRANSCRIPTION FACTOR 1 292 - -
Gma18g02272 293 SMART finulus 116 165 IPR011598 GO:0046983
Gma18g02272 293 Pfam Helix-loop-helix DNA-binding domain 114 160 IPR011598 GO:0046983
Gma18g02272 293 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 1 292 - -
Gma18g02272 293 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 110 159 IPR011598 GO:0046983
Gma18g02272 293 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 110 171 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g02272 Gma-Chr18 56416072 56420411 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g02272 31 282 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 37.591 3.79e-41 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma18g02272 HLH 9.4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g02272 - - gmx:100807671 499.975