Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g02271 ATGGGTGGTGATGATTTCTTCAATATTCAAAGCCATGGCCACATGAGCCCTTTCAATGAAGAAGAGTACTCCTCGGGAGAGAGAGACATGATTGTTCAGCAACAAGTTTTCTCTCCCAATCTCTCTTCTTCCTCCCTTCAAAGCAACTTGGAATTACCTTACTCATCATCTCCAACGGGTAACGTTTTGTCTTTTGATAACCCCCTTGTAGGATCACTTCACCCTCAAAATGACTCCGCTAAAAGCATGGAACAAAGCCATTGCGTTGAACCAAAGGCGTACCCACGAACAAACGCACAAGTTCACATACTGGCCGAGAGAAAAAGGAGAGAGGAGCTGACTAGGTGCATCATAGCACTTTCAGCCACCATTCCTGGCTTAAAGAAGACAGACAAGGTCTCTGTACTGCGTGAAGCTGTGAACTATGTGAAACAACTTCAAGAACGTGTGAAAGAGCTAGAAAATCAAATGAGGAAGGAATGTGTGAATTCAATAATACTTACCAAGAAAGCGCTAATTTGCAAAAATGATCGTGTGGAAGAACTCCTCGAGGTGAAAGTAACTGTGTTAGATAAGGAAGTGCTCATTGGAGTCCATTGTGAGAAACAAAGAAAATCTTTGCTCAAAATATTGTCCTTGCTTAATAATCTCCATCTTTCTATAACCAGTACCAGCGTATTGCCATTTGGGAGTTCCACTCTTAAGATTACCATTATCTCTCAGATGGATGACGAATATAACATGACAGTTGATGATCTAGTAAGAACACTGCGTCAACGCATATTGAGTTTGAAGTCACACGATACGTAA 810 0.4148 MGGDDFFNIQSHGHMSPFNEEEYSSGERDMIVQQQVFSPNLSSSSLQSNLELPYSSSPTGNVLSFDNPLVGSLHPQNDSAKSMEQSHCVEPKAYPRTNAQVHILAERKRREELTRCIIALSATIPGLKKTDKVSVLREAVNYVKQLQERVKELENQMRKECVNSIILTKKALICKNDRVEELLEVKVTVLDKEVLIGVHCEKQRKSLLKILSLLNNLHLSITSTSVLPFGSSTLKITIISQMDDEYNMTVDDLVRTLRQRILSLKSHDT 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g02271 269 Pfam Helix-loop-helix DNA-binding domain 101 147 IPR011598 GO:0046983
Gma18g02271 269 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 97 146 IPR011598 GO:0046983
Gma18g02271 269 PANTHER BHLH TRANSCRIPTION FACTOR 3 264 - -
Gma18g02271 269 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 100 158 IPR036638 GO:0046983
Gma18g02271 269 MobiDBLite consensus disorder prediction 1 25 - -
Gma18g02271 269 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 3 264 - -
Gma18g02271 269 Coils Coil 136 163 - -
Gma18g02271 269 Gene3D - 90 160 IPR036638 GO:0046983
Gma18g02271 269 SMART finulus 103 152 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g02271 Gma-Chr18 56410528 56413228 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g02271 89 258 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 43.716 2.66e-42 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma18g02271 HLH 8.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g02271 - - gmx:100807144 479.944