Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g02226 ATGGAATTCGATGCCGCGATTCCCGTTTCTCGAGAGCACCTCCCTCAAGATGCAATGTGGCAAATTAACTTGAGGTCAAGTGAAACAATGGAATCAGAACCTTATCCTGAGCATCCAGGAGAACCAGATTGTTCATACTACATTAGGACTGGCCTTTGTAGATTTGGAGCAACATGTCGATTTAATCATCCTCCTAACAGGAAGCTGGCTATTGCCGCTGCAAGGATGAAAGGTGAATTCCCAGAAAGGATAGGACAGCCAGAATGCCAGTACTATTTGAAGACAGGAACTTGCAAATTTGGAGCCACATGCAGGTTTCATCATCCTAGAGACAAGGCTGGGATTGCTGGAAGAGTTGCCTTGAATATTTTAGGCTATCCTCTCCGCCCAaatgaACCAGAATGTGGTTATTATTTAAGAACTGGACAATGTAAATTTGGGAACACTTGCAAATTTCACCATCCTCAACCAAACAATATGGTGCTTTCCATGCGAAGTTCTCCTGTTTATCCTACTGTCCATTCTCCAACTACACCAGGTCACCAGTCATATGCGACAGGAATTACAAATTGGTCTAGTTCATCGTATATTCCTAGCCCACGTTGGCAAGGCCCTTCAAGTTATGCACCTTTAATTCTACCTCAGGGAATGGTTTCAGTGTCTGGGTGGAGTGCATACAGTGGTCAAATGGGATCAGACAGTCCACAGCAAACAATGGCAAATGGCCAAAGCTATGGAACTTCTCGACAAAGTGAACCAGCAAATTCAGGATCCCAGGGGGCATATTCTCAATTTCGTTCTGGCTCTGTTCCTGTAGGGTTCTATGCGTTGCAGAGGGAGAACATATTTCCTGAGAGACCTGATCAGCCTGAATGTCAATTCTACATGAAGACTGGAGATTGCAAGTTTGGTGCAGTCTGTCGTTTCCATCATCCACATGAAAGGATGATTCCTGCTCCTGACTGTGTTTTGAGTCCTATAGGTCTTCCTTTACGTCCTATCCCCACCTAA 1011 0.4461 MEFDAAIPVSREHLPQDAMWQINLRSSETMESEPYPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIAAARMKGEFPERIGQPECQYYLKTGTCKFGATCRFHHPRDKAGIAGRVALNILGYPLRPNEPECGYYLRTGQCKFGNTCKFHHPQPNNMVLSMRSSPVYPTVHSPTTPGHQSYATGITNWSSSSYIPSPRWQGPSSYAPLILPQGMVSVSGWSAYSGQMGSDSPQQTMANGQSYGTSRQSEPANSGSQGAYSQFRSGSVPVGFYALQRENIFPERPDQPECQFYMKTGDCKFGAVCRFHHPHERMIPAPDCVLSPIGLPLRPIPT 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g02226 336 ProSiteProfiles Zinc finger C3H1-type profile. 286 314 IPR000571 GO:0046872
Gma18g02226 336 ProSiteProfiles Zinc finger C3H1-type profile. 129 157 IPR000571 GO:0046872
Gma18g02226 336 SUPERFAMILY CCCH zinc finger 43 66 IPR036855 GO:0046872
Gma18g02226 336 Gene3D - 16 73 - -
Gma18g02226 336 SMART c3hfinal6 129 156 IPR000571 GO:0046872
Gma18g02226 336 SMART c3hfinal6 286 313 IPR000571 GO:0046872
Gma18g02226 336 SMART c3hfinal6 38 65 IPR000571 GO:0046872
Gma18g02226 336 SMART c3hfinal6 83 110 IPR000571 GO:0046872
Gma18g02226 336 ProSiteProfiles Zinc finger C3H1-type profile. 83 111 IPR000571 GO:0046872
Gma18g02226 336 ProSiteProfiles Zinc finger C3H1-type profile. 39 66 IPR000571 GO:0046872
Gma18g02226 336 SUPERFAMILY CCCH zinc finger 289 315 IPR036855 GO:0046872
Gma18g02226 336 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 33-RELATED 11 333 - -
Gma18g02226 336 PANTHER PROTEIN PHOSPHATASE RELATED 11 333 - -
Gma18g02226 336 SUPERFAMILY CCCH zinc finger 132 157 IPR036855 GO:0046872
Gma18g02226 336 MobiDBLite consensus disorder prediction 229 263 - -
Gma18g02226 336 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 132 156 IPR000571 GO:0046872
Gma18g02226 336 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 40 65 IPR000571 GO:0046872
Gma18g02226 336 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 288 312 IPR000571 GO:0046872
Gma18g02226 336 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 86 110 IPR000571 GO:0046872
Gma18g02226 336 SUPERFAMILY CCCH zinc finger 87 112 IPR036855 GO:0046872
Gma18g02226 336 Gene3D - 274 321 - -
Gma18g02226 336 Gene3D - 84 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g02226 Gma-Chr18 56028532 56035098 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g02226 19 333 C2H2 Transcription Factor Family AT3G02830 65.831 6.37e-145 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gma18g02226 zf-CCCH 1.3e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g02226 - - gmx:100785411 719.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g02226 18 56028532 56035098 Gma09g02298 09 48451957 48459636 GST