LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma18g02196	ATGGCGGAAGATTGGGATCTACATGCGGTGGTTAGAGGCTGCTCCACCGTTACATCATCCTCAGTGTCTTCTTCTTCATCTCCTTCTTCCTCTGGTTTTGCCTCTTCTTACTTCCACCCTGAAGCTGCAGTTTCTTCTTCTTCTTCTTCCTATTCTGGCTTCAACATCTTCAAGGGTGAACAAGGAATAAGCCAAGTTTTGTCGCTCTCTGCGTACCCCTTTGAGGCAAGGAGCTCCATTGAGGAATTGCATGAGCTTTGCAAACCTTTCTTCTCCAAATCTCAGCCTCTAACGTTGCAAGCCTCTTCACCTTTGTCCTCACTCTCTTCCTATTCCTCTGCGCCACCCAAATCTGTTTCAACGCAAGAGAAACAACAACAGAGGAGCAAGCAGGCACATGCTGTCACCACCCCACGATCTAAAAGAAGAAAGAACCAGCTTAAGAAAGTTTGTCAAGTGCCAGTTGAGAATCTCTCCTCAGACATATGGGCATGGAGGAAATATGGCCAGAAACCCATAAAGGGGTCTCCATATCCAAGGGGGTACTATAGATGTAGCAGCTCAAAGGGGTGTTTGGCAAGGAAACAGGTTGAAAGAAACAGATCAGACCCAACAATGTTTATAGTGACTTACACTGCTGAGCACAACCACCCTGCTCCTACTCACAGAAACTCTCTTGCTGGCTCCACACGTCAGAAGCCATTGGTACCTCAAACAGCCACCACCACTGAAGAAGACTCTGACAAGAGCAAGAGCCTCACAAAACCCACTTCCCCTGCCACCTCAGGGGCAGAAGAAGAGGCTCCAACACCATCACAAGGGGAAAAGTCTGAGAGCAGAGAAGAGAAAGAGGATGTGATGGATGATGAGGAAGAAGATGAATTTGGCTTGTCTGATATGGTGCTTTCAGATGACTTCTTTGAAAGTTTGGATGAACTGAGCCAACTTACGGCTCCTTCTGTTGTCACTGGAGACTGTTTCAGTGACCCCTTTTCAGCAATTGCAATCCCTTCTTGGGTGGCTAGTGGTGCTGCTACTGCTAGTGGGTGTAGATGA	1056	0.4754	MAEDWDLHAVVRGCSTVTSSSVSSSSSPSSSGFASSYFHPEAAVSSSSSSYSGFNIFKGEQGISQVLSLSAYPFEARSSIEELHELCKPFFSKSQPLTLQASSPLSSLSSYSSAPPKSVSTQEKQQQRSKQAHAVTTPRSKRRKNQLKKVCQVPVENLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNRSDPTMFIVTYTAEHNHPAPTHRNSLAGSTRQKPLVPQTATTTEEDSDKSKSLTKPTSPATSGAEEEAPTPSQGEKSESREEKEDVMDDEEEDEFGLSDMVLSDDFFESLDELSQLTAPSVVTGDCFSDPFSAIAIPSWVASGAATASGCR	351

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma18g02196	351	MobiDBLite	consensus disorder prediction	217	243	-	-
	Gma18g02196	351	Gene3D	WRKY domain	143	213	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Gma18g02196	351	MobiDBLite	consensus disorder prediction	108	134	-	-
	Gma18g02196	351	MobiDBLite	consensus disorder prediction	214	299	-	-
	Gma18g02196	351	MobiDBLite	consensus disorder prediction	284	299	-	-
	Gma18g02196	351	PANTHER	TRANSCRIPTION FACTOR WRKY FAMILY-RELATED	1	341	-	-
	Gma18g02196	351	MobiDBLite	consensus disorder prediction	253	268	-	-
	Gma18g02196	351	PANTHER	WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED	1	341	IPR044810	GO:0003700
	Gma18g02196	351	ProSiteProfiles	WRKY domain profile.	154	220	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Gma18g02196	351	Pfam	WRKY DNA -binding domain	161	218	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Gma18g02196	351	SUPERFAMILY	WRKY DNA-binding domain	157	220	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Gma18g02196	351	SMART	WRKY_cls	159	219	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Gma18g02196	351	MobiDBLite	consensus disorder prediction	108	148	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma18g02196	Gma-Chr18	55762651	55764722	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma18g02196	1	349	WRKY Transcription Factor Family	AT4G01250	48.459	9.63e-85	257

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Gma18g02196		WRKY	3.4e-25	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma18g02196	K13425		-	gmx:100170675	626.32

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gma18g02196	18	55762651	55764722	Gma10g02188	10	49465910	49467025	ECH
	Gma18g02196	18	55762651	55764722	Gma18g02196	18	55762651	55764722	ECH
	Gma18g02196	18	55762651	55764722	Gma16g00288	16	3041246	3043246	ECH
	Gma01g02223	01	57442275	57443111	Gma18g02196	18	55762651	55764722	ECH
	Gma11g00193	11	1517954	1518722	Gma18g02196	18	55762651	55764722	ECH
	Gma05g02071	05	41968198	41969676	Gma18g02196	18	55762651	55764722	ECH
	Gma08g00174	08	1506030	1507788	Gma18g02196	18	55762651	55764722	ECH
	Gma18g02196	18	55762651	55764722	Gma09g02333	09	48691945	48693640	GST
	Gma18g02196	18	55762651	55764722	Gma16g00288	16	3041246	3043246	PCT
	Gma16g00288	16	3041246	3043246	Gma18g02196	18	55762651	55764722	PCT