Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g02186 ATGTCAATCTTCGACGGAGCTTTCATGAACACGCAACTCTCCAAGCACACTTCGATCTTCGGCCTCCGTCTCTGGGTCGTGATCGGAATTCTCATCGGAGTCTTCATCGTCTTCACGCTCTTCCTCCTCTCCCTCTGCCTTGTCTCTCGCCGGAACCGCCGCCGCTCCGGCGCAGGCACCGGCTACAAGGTCGCCGGAGGCGCCGACGCGGCGAAGGACATCCACACGATCGTGCACCTTCCCGGGCCCCACATGCTCCGGCCTCCGGCGCCGGAGATCCACGTGGAGATGGGGAAGAAGACGGAGCACCGGGTGGTGGTGCAGTGCGATAGGGTTTCAAGTGAGGAGAGTAAGGTCACGGTGGGGAGTGGGTGTGAAACGACGTCGTCTTTTGGAAGTGGGAGTGTTGGTGGGCCTGGGCCTGGGCTTGGGCCTGAGGTTTCACATCTTGGGTGGGGGAGGTGGTACACTCTGAGGGAGCTTGAGGATGCCACTGGAGGGTTGAGTCCTGAAAATGTGGTTGGTGAAGGTGGCTATGGCATTGTCTATCATGGGGTACTCAATGATGGTACCAAAATTGCTGTCAAGAACCTCTTGAATAACAAGGGACAAGCTGAGAAAGAATTTAAAGTAGAGGTAGAAGCAATTGGTCGAGTGCGACACAAAAATCTTGTTAGGTTGCTTGGATACTGTGTCGAGGGAGCCTACAGGATGCTTGTGTATGAGTATGTAGACAATGGCAATCTAGAACAATGGCTGCATGGGGATGTTGGAGCTGTAAGCCCTTTGACATGGAACATACGGATGAACATTATATTGGGAACAGCAAGAGGATTGGCCTATCTTCATGAGGGTCTTGAACCAAAAGTTGTCCACCGAGATGTGAAATCAAGTAACATACTCATTGATCGCCAATGGAACTCCAAGGTTTCTGATTTTGGGCTTGCTAAGCTTTTATGTTCTGAGAATAGTTATGTCACAACTCGAGTGATGGGAACATTTGGTTATGTTGCACCAGAATATGCATGCACCGGAATGCTAACTGAGAAGAGTGATATTTATAGCTTTGGGATACTTATCATGGAGATAATTACCGGAAGAAGCCCTGTTGATTATAGTAGACCACAAGGAGAGGTTAATTTAATAGAATGGTTGAAGACTATGGTTGGGAATCGAAAATCTGAGGAAGTAGTTGATCCTAAGCTCCCTGAGATGCCATCTTCAAAGGCTCTTAAACGCGCTTTGTTGATTGCTCTTCGGTGTGTTGATCCTGATGCAACCAAGAGGCCAAAAATGGGACATGTGATCCACATGCTTGAAGCAGATGACCTGTTATTCCATACTGAACAAAGAACTGAGGGAGAGTCTTCCCGTTCCTATCAAAGTGAGCAAAGGGACTCAAATTTAGATAAGAGAAGAGATGGAGGTGCCAATGATAAAAGTGAAGATGCTAGTACTAGATGGAGATGA 1470 0.4871 MSIFDGAFMNTQLSKHTSIFGLRLWVVIGILIGVFIVFTLFLLSLCLVSRRNRRRSGAGTGYKVAGGADAAKDIHTIVHLPGPHMLRPPAPEIHVEMGKKTEHRVVVQCDRVSSEESKVTVGSGCETTSSFGSGSVGGPGPGLGPEVSHLGWGRWYTLRELEDATGGLSPENVVGEGGYGIVYHGVLNDGTKIAVKNLLNNKGQAEKEFKVEVEAIGRVRHKNLVRLLGYCVEGAYRMLVYEYVDNGNLEQWLHGDVGAVSPLTWNIRMNIILGTARGLAYLHEGLEPKVVHRDVKSSNILIDRQWNSKVSDFGLAKLLCSENSYVTTRVMGTFGYVAPEYACTGMLTEKSDIYSFGILIMEIITGRSPVDYSRPQGEVNLIEWLKTMVGNRKSEEVVDPKLPEMPSSKALKRALLIALRCVDPDATKRPKMGHVIHMLEADDLLFHTEQRTEGESSRSYQSEQRDSNLDKRRDGGANDKSEDASTRWR 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g02186 489 SMART serkin_6 168 446 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma18g02186 489 ProSiteProfiles Protein kinase domain profile. 168 445 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma18g02186 489 PANTHER BRASSINOSTEROID INSENSITIVE 1-ASSOCIATED RECEPTOR KINASE 1 488 - -
Gma18g02186 489 Gene3D Phosphorylase Kinase; domain 1 152 243 - -
Gma18g02186 489 Gene3D Transferase(Phosphotransferase) domain 1 244 456 - -
Gma18g02186 489 ProSitePatterns Serine/Threonine protein kinases active-site signature. 290 302 IPR008271 GO:0004672|GO:0006468
Gma18g02186 489 PANTHER OS01G0323000 PROTEIN 1 488 - -
Gma18g02186 489 MobiDBLite consensus disorder prediction 450 489 - -
Gma18g02186 489 CDD STKc_IRAK 174 440 - -
Gma18g02186 489 Pfam Protein kinase domain 171 437 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma18g02186 489 SUPERFAMILY Protein kinase-like (PK-like) 146 440 IPR011009 -
Gma18g02186 489 ProSitePatterns Protein kinases ATP-binding region signature. 174 196 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g02186 Gma-Chr18 55616125 55619870 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g02186 105 463 Receptor kinase-like Gene Family AT4G02010 41.823 4.26e-94 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Gma18g02186 Pkinase 9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g02186 - - gmx:100817295 961.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g02186 18 55616125 55619870 Gma09g02342 09 48800727 48804347 GST
Gma18g02186 18 55616125 55619870 Gma07g00609 07 6261765 6265432 PCT
Gma18g02186 18 55616125 55619870 Gma16g00294 16 3116641 3120886 PCT
Gma07g00609 07 6261765 6265432 Gma18g02186 18 55616125 55619870 PCT
Gma16g00294 16 3116641 3120886 Gma18g02186 18 55616125 55619870 PCT