Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g02181 ATGACGACGATGGAGGAAGAGAGAGACGTGTCATCGGATGAGTTATCAGAGGAGAAATATGACCCAGTGGAGGAGATCCAAAGAGTCATCCAATCCATAGTTCAATTCGGCGAGTACCGGAGGACACAGAGGAAGGAGAGCCACAACCTCGTGCGCCGTTTCAAGCTCATGTTGCCTCTCTGGGAAGAGCTTCGTGACCTCCCACAACCCTTCCCAGAAATCGGCGTCACTTGGTTATCCAAAGTCAAGGATGTGCTTTTGTTCGCCAAGGATTTGTTGAAACTATGTAGCCAAGGAAGCAAGATCCACCTCGCTTTGGAAACCGAGGTAGTTATGATCACGTTTCAGAAAGTGTATGACAAATTAAGCCAAGCGTTTGGTGATGTGCCTTGTgATGAAATGGGTATCTCAGATGAAGTCAAGGAACAACTTGAGCTAATGCACGTGCAACTCAAGCGAGCCAGGAGAAGAACTGATACACAGGACATAGAACTTGCAATGGATATGATGGTTGTGTTTTCTGATAATGATGACAGAAATGCTGATAGTGCTATCATTGAGAGGCTGGCTAAAAAGCTGGAGCTTCATAGTGTTGAGGATCTCAATATAGAAACATTGGCTATTAGGAACCTTGCTGCAGAAAGAAAAGGGCAACAGGCTGAGAGCACTCAGAAAATAATTTACCTTCTTAACAAATTCAAACGAATTGCAGGCATGGAAGAAACCGGCATCCTTGATGATCCTGCCGCACCCAAGATGCTTGAGAGGTGCACCTCTTTGGTCATCCCTCATGAGTTTCTCTGCCCAATTACACTAGAAATCATGACAGATCCTGTCATTGTAACAAGTGGACAGACATATGAAAGGGAAAGCATAAAGAAGTGGTTCCAATCCAACCATAACACATGCCCAAAGACCAGGCAACCTTTGGAACACTTGTCATTGGCACCAAACCGTGccttgaaaagcttgattgaagaatggtgtgagaacaacaacttcaaacttcctaaaaaatacaattcttcaggtccagaaagctgtcctatagacagcaaagaggaaattccagctttggttgaGAGCCTGTCATCTATTCATTTAGAAGAGCAGAGAAAAGCAGTGGAGAAGATACGTATGCTATCAAAGGAAAATCCTGAGAACAGAGTTTTGGTTGCTGAACATGGAGGAATACCACCTCTAGTGCAACTTTTGTCCTATCCAGATTCAAAAATACAAGAACATGCAGTAACAGCACTTTTGAATTTATCAATTGATGAGGGTAACAAGAGTCTTATATCCACAGAAGGTGCCATTCCAGCTATCATAGAAGTTTTGGAGAATGGTAGTTGTGTGGCTAAGGAGAACTCAGCCGCAGCTTTATTCAGCTTGTCAATGCTTGATGAGATTAAAGAGATTGTTGGTCAATCAAATGGacaagagaTTGGACAACTTAGTTTCATTGAAACCCTTGTTGAGTTCATGAGAGAAGGGAGTCCAAAGAACAAGGAATGTGCAGCATCTGTTCTTCTTGAGTTGTGCTCAAGTAACTCATCCTTTACATTGGCAGCACTTCAGTTTGGAGTGTATGAGTATTTAATGGAGATAAAACAAAATGGAACAAATAGAGCACAGAGGAAAGCAAATGCAATCTTAGATCTCATTAGCAGGAGCGAGCAAATTTAA 1686 0.395 MTTMEEERDVSSDELSEEKYDPVEEIQRVIQSIVQFGEYRRTQRKESHNLVRRFKLMLPLWEELRDLPQPFPEIGVTWLSKVKDVLLFAKDLLKLCSQGSKIHLALETEVVMITFQKVYDKLSQAFGDVPCDEMGISDEVKEQLELMHVQLKRARRRTDTQDIELAMDMMVVFSDNDDRNADSAIIERLAKKLELHSVEDLNIETLAIRNLAAERKGQQAESTQKIIYLLNKFKRIAGMEETGILDDPAAPKMLERCTSLVIPHEFLCPITLEIMTDPVIVTSGQTYERESIKKWFQSNHNTCPKTRQPLEHLSLAPNRALKSLIEEWCENNNFKLPKKYNSSGPESCPIDSKEEIPALVESLSSIHLEEQRKAVEKIRMLSKENPENRVLVAEHGGIPPLVQLLSYPDSKIQEHAVTALLNLSIDEGNKSLISTEGAIPAIIEVLENGSCVAKENSAAALFSLSMLDEIKEIVGQSNGQEIGQLSFIETLVEFMREGSPKNKECAASVLLELCSSNSSFTLAALQFGVYEYLMEIKQNGTNRAQRKANAILDLISRSEQI 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g02181 561 CDD RING-Ubox_PUB 266 308 IPR045210 -
Gma18g02181 561 SUPERFAMILY RING/U-box 261 337 - -
Gma18g02181 561 ProSiteProfiles U-box domain profile. 261 335 IPR003613 GO:0004842|GO:0016567
Gma18g02181 561 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 396 438 IPR000225 GO:0005515
Gma18g02181 561 Pfam U-box domain 262 332 IPR003613 GO:0004842|GO:0016567
Gma18g02181 561 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 262 336 IPR013083 -
Gma18g02181 561 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 15 16 479 - -
Gma18g02181 561 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 15 480 559 - -
Gma18g02181 561 SUPERFAMILY ARM repeat 353 556 IPR016024 -
Gma18g02181 561 Gene3D - 349 560 IPR011989 -
Gma18g02181 561 Pfam Armadillo/beta-catenin-like repeat 385 424 IPR000225 GO:0005515
Gma18g02181 561 PANTHER U BOX DOMAIN-CONTAINING 16 479 - -
Gma18g02181 561 PANTHER U BOX DOMAIN-CONTAINING 480 559 - -
Gma18g02181 561 SMART Ubox_2 265 328 IPR003613 GO:0004842|GO:0016567
Gma18g02181 561 SMART arm_5 385 425 IPR000225 GO:0005515
Gma18g02181 561 SMART arm_5 475 515 IPR000225 GO:0005515
Gma18g02181 561 SMART arm_5 426 466 IPR000225 GO:0005515
Gma18g02181 561 Coils Coil 137 157 - -
Gma18g02181 561 Gene3D - 18 131 IPR036537 GO:0007166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g02181 Gma-Chr18 55523087 55526173 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g02181 23 561 U-box Gene Family AT5G42340 52.039 0.0 600
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g02181 - - gmx:100789656 953.355
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g02181 18 55523087 55526173 Gma09g02346 09 48843398 48845716 GST