Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g02172 ATGGGTTTTCCCGTAGGGTACCCGGAGCTGCTGGTTCCGAAAATGTTCCTCCACGCGCTTTCCCTCCTCGCGTGGCTGCGCTCCCTCGTCTTCGCCCTCTTCCGCCTCCTCCGCATCTCCGACCTCCTCGACACCGATTCCGCCGCCTCTGACCTCCCTCCGCCGCCTCCGCCACGCGAGCCGACTCTCTCCGCCCTCCTCATCCGCGAGTTTCTCCCCGTGGCGGCGTTCCGCGACCTGGCAGCCGCCGACGGGGATCCTCCGCCGTCGGGCTGCGCCGTGTGCCTGAGCGAATTCTCCTCGGAAGAAGAAATCCGGTGTATGGCGAACTGCAAGCACATTTTCCACCGGTGGTGCGTGGACCGTTGGGTCGATCACGATCAGAAGACGTGTCCGCTCTGCAGAACTCCGTTTGTGCCGCATCACAAGCTCGAAGAATACAATCAGCGACTGTGGGCAGCTTCTGGAGTTTCACAGTTTTACTACCAAGACGATTACACGGCTTCTCTCTGA 513 0.616 MGFPVGYPELLVPKMFLHALSLLAWLRSLVFALFRLLRISDLLDTDSAASDLPPPPPPREPTLSALLIREFLPVAAFRDLAAADGDPPPSGCAVCLSEFSSEEEIRCMANCKHIFHRWCVDRWVDHDQKTCPLCRTPFVPHHKLEEYNQRLWAASGVSQFYYQDDYTASL 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g02172 170 ProSiteProfiles Zinc finger RING-type profile. 92 135 IPR001841 -
Gma18g02172 170 SMART ring_2 92 134 IPR001841 -
Gma18g02172 170 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 168 - -
Gma18g02172 170 Pfam Ring finger domain 92 135 IPR001841 -
Gma18g02172 170 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 140 IPR013083 -
Gma18g02172 170 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 1 168 - -
Gma18g02172 170 SUPERFAMILY RING/U-box 85 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g02172 Gma-Chr18 55441377 55442224 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g02172 1 168 C3H Transcription Factor Family AT1G63840 43.529 1.29e-47 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g02172 K16281 - gmx:100813224 331.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g02172 18 55441377 55442224 Gma09g02350 09 48892392 48893194 GST
Gma18g02172 18 55441377 55442224 Gma07g00623 07 6391299 6391961 PCT
Gma18g02172 18 55441377 55442224 Gma16g00306 16 3224620 3225230 PCT
Gma07g00623 07 6391299 6391961 Gma18g02172 18 55441377 55442224 PCT
Gma16g00306 16 3224620 3225230 Gma18g02172 18 55441377 55442224 PCT