Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g02169 ATGGGAGGTTGCTGTTGTTCTGCCAGAAAACCTCATCTGCAAGGGGCACCAGTGTATTACTATTGCCCACCAACTTTTGAAGAGCGTGAGTCTTTAACATCTAATGATGGCTTGAATGCTTCAGTCAATGCTGGATTTCTTGTTGGTTTGAACCTGGAAGCATCCATGCCTGATACTTTCCAGCCCCCTCCTGTGCCTCTACCTTATGATATGGTCTTGGGAGGTTCTGCATCAACAGATTCTGAATCTGGCAGAGAAACAGTTAGTAGTTTTGAAACTTCAATTACACTTGAAGATGTTGAAGAATCAGATTGTAAAGCTCAAGCCAATTCTGCTCCTACATCTCCAAAGAAGGCACAACTATCAAAATCAAATGTAACTCAAGAATTAGTGACAGAAGAAGAGGATGTCTGTCCAATTTGTCTTGAAGAATTTGATGTTGAAAATCCTAGAAATTTGACAAAATGTGAACACCATTTTCACTTATCATGCATTCTTGAGTGGATGGAAAGAAGTGACTCATGTCCTATATGTGATCAGGAGATGATATTTTGA 555 0.3982 MGGCCCSARKPHLQGAPVYYYCPPTFEERESLTSNDGLNASVNAGFLVGLNLEASMPDTFQPPPVPLPYDMVLGGSASTDSESGRETVSSFETSITLEDVEESDCKAQANSAPTSPKKAQLSKSNVTQELVTEEEDVCPICLEEFDVENPRNLTKCEHHFHLSCILEWMERSDSCPICDQEMIF 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g02169 184 ProSiteProfiles Zinc finger RING-type profile. 138 179 IPR001841 -
Gma18g02169 184 SUPERFAMILY RING/U-box 127 182 - -
Gma18g02169 184 SMART ring_2 138 178 IPR001841 -
Gma18g02169 184 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 183 IPR013083 -
Gma18g02169 184 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 184 - -
Gma18g02169 184 Pfam Ring finger domain 137 178 IPR001841 -
Gma18g02169 184 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHB1A-RELATED 1 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g02169 Gma-Chr18 55413824 55416082 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g02169 1 184 C3H Transcription Factor Family AT4G00335 58.065 8.52e-73 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g02169 - - gmx:100812687 387.111
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g02169 18 55413824 55416082 Gma09g02353 09 48915225 48917278 GST
Gma18g02169 18 55413824 55416082 Gma07g00632 07 6486928 6489832 PCT
Gma18g02169 18 55413824 55416082 Gma16g00314 16 3297209 3300214 PCT
Gma07g00632 07 6486928 6489832 Gma18g02169 18 55413824 55416082 PCT
Gma16g00314 16 3297209 3300214 Gma18g02169 18 55413824 55416082 PCT