Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g02165 ATGATGAGTAATGGTGATCCATTGGATTTGTATAAGCTTTTCATGGTGGTGAAGGAGAAGGGTGGTTATGATGCTGTTTGTAAGAACAAGTTGTGGGATTTGGTGGGGGAAGAATATGGGTTGGGTGTGAAGGTTGGTTCCTCTGCTGAACTTGTTTATAGTAAACATTTGAGTTCTCTAGAGGCATGCTTAAAGAATGCTACTGATGGTAAGTTCCCTGAGTGTGGTTTAATAGATGATAGAGTTAAGTTTCACAAGCATTTGATGGAGGCGCAAGCTGAATCCTTGTTGGATGACTCTGGTGAGGAAGAGGCGGGGGATGAACTCGAGAGGATAGTGTGTGACTGTAAGGATGGGAGGAAGTTGTGTGGTAGTAATAGAGTGAAGTATGTGAAACCGGAGTCAAATGTGGCTGAACTCGAGAGGGTATATGAGTATTTAGATGAAACGAAGTCGTGTGTTAGTGATAGTGTGAAGGGCAAGAAATCAGATTCTAATGGGGATGAATTTGATAATGTATGTGACTTTCTAGATGGGAGGGAGTTGTGTGATACTAATAGGGTGAAGGGTGTGAGTCCAGAGTCTAATGGGGACAAGAAAGTTCAGAGCAAAGGACTTGTTGATTTGGATATGCTGGACAATGGGACGGATGAGCATATTATCAGAAACTTGTGCAGTCTTAATACTGAGAGGAATATACTGGAAGAGTTTGATGGGGGGAAAATATTAACTGTGGATGCATCTGATGCAGAGAGCAACATGCCTAGATTGTCGGATGGAAGCAAGTGCTGTGATAATGATGATGATGATGATAGTGATGAAGTCTTGATATTGGATCCATCTGGTGTTGACAAAGAGATATTTGGTCGTAAGAGGAAGAGAGAGTCTAAGTCAGAAATGCTAAGTTGGATTACTAGCATTGCTAAAAATCCTTGTGATTCCACAGTCGGTTCGATTCCTGAAAAGTCTAAGTGGAAGTTTTACAGTAGTCAGGAGATCTGGAAGCAGGTTTTGTTGTTTCGAGAAGCTGTCTTTCTGAAGAAAGATTTTGAGACAACCAGTGAACAGCTTAATTGGCAGGGACAGAAAATGCATCCTTCTATGTATGATGATCGTGTTGGGGCAATGTACAATCTTAGACAGAGGTTGAAATGTGACAAGAGAGTTTTATTGGGAAAAACTACATCTGGAGGAGTCTCCTTAGCTTCATCTGGAGGAACACATGTGGATTTGGAGAGGACCCCAAGTTCTCATGCTGAAGATCGTGCTGAGAAATTGTTACCTGACTCCGGTACTGCTCACTCAAGCCTTGATAGATGTGCCAGAGTGCACATCCCTTTGGGGCCAAACCATCAAGCTGAAGTGCCAGAATGGACTGTCATAACTTATGAGGTTGATTCAAAGTGGTTGGGGACCCAAATATGGCCTCCAAAAACTGTAAATTCCAAATGTCGTCTTTTTGAAAGGGACCCCATTGGAGAGGGAAGACAAAATTCATGTGGCTGCCAAGTACAAGGTTCTGTTGAGTGTGTCCGGTTCCACATTGCTAAGAGAAGGGCTAAAGTTAAGTTGGAATTGGGTGAGGCGTTTCACCAATGGAATTTACATAAGGTAGGTGAAGAAGTTGGGGGTTCATGGACAGAGCAAGAAGAGAAGAAGTTCAAAGATGTGGTGAAATCAAACCCTGCTTCACTTGATAAATGTTTTTGGGATCATCTTTTCAAAACATTTCCTAAGAAGAGCAGAGAAGATTTAGTCAGCTACTATTTCAATGTCTTTCTTTTGCAGCGCAGAGCATATCAGAATAGGCATACTCCTGATAACATTGACAGTGATGATGATGAATCAGAATTCACACCATTGAGGAAAGTTTTTGGACATCAAACACCAAAACCTCGCAGCTTCACCTTGTTATCCCCCAAAAAAGCCACATTCAAAAGGGAAAATAACAAGTGA 1956 0.4187 MMSNGDPLDLYKLFMVVKEKGGYDAVCKNKLWDLVGEEYGLGVKVGSSAELVYSKHLSSLEACLKNATDGKFPECGLIDDRVKFHKHLMEAQAESLLDDSGEEEAGDELERIVCDCKDGRKLCGSNRVKYVKPESNVAELERVYEYLDETKSCVSDSVKGKKSDSNGDEFDNVCDFLDGRELCDTNRVKGVSPESNGDKKVQSKGLVDLDMLDNGTDEHIIRNLCSLNTERNILEEFDGGKILTVDASDAESNMPRLSDGSKCCDNDDDDDSDEVLILDPSGVDKEIFGRKRKRESKSEMLSWITSIAKNPCDSTVGSIPEKSKWKFYSSQEIWKQVLLFREAVFLKKDFETTSEQLNWQGQKMHPSMYDDRVGAMYNLRQRLKCDKRVLLGKTTSGGVSLASSGGTHVDLERTPSSHAEDRAEKLLPDSGTAHSSLDRCARVHIPLGPNHQAEVPEWTVITYEVDSKWLGTQIWPPKTVNSKCRLFERDPIGEGRQNSCGCQVQGSVECVRFHIAKRRAKVKLELGEAFHQWNLHKVGEEVGGSWTEQEEKKFKDVVKSNPASLDKCFWDHLFKTFPKKSREDLVSYYFNVFLLQRRAYQNRHTPDNIDSDDDESEFTPLRKVFGHQTPKPRSFTLLSPKKATFKRENNK 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g02165 651 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 1 1 646 - -
Gma18g02165 651 Gene3D - 1 72 IPR036431 GO:0003677
Gma18g02165 651 ProSiteProfiles ELM2 domain profile. 443 567 IPR000949 -
Gma18g02165 651 CDD SANT 545 593 IPR001005 -
Gma18g02165 651 ProSiteProfiles ARID domain profile. 1 65 IPR001606 GO:0003677
Gma18g02165 651 CDD ARID 4 61 - -
Gma18g02165 651 SMART bright_3 1 66 IPR001606 GO:0003677
Gma18g02165 651 SUPERFAMILY ARID-like 4 73 IPR036431 GO:0003677
Gma18g02165 651 MobiDBLite consensus disorder prediction 604 651 - -
Gma18g02165 651 SMART sant 542 595 IPR001005 -
Gma18g02165 651 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 1 646 - -
Gma18g02165 651 SMART ELM2_2 445 497 IPR000949 -
Gma18g02165 651 MobiDBLite consensus disorder prediction 401 423 - -
Gma18g02165 651 MobiDBLite consensus disorder prediction 604 621 - -
Gma18g02165 651 Pfam ARID/BRIGHT DNA binding domain 4 59 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g02165 Gma-Chr18 55371622 55377062 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g02165 5 78 ARID Transcription Factor Family AT1G20910 36.364 2.48e-06 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Gma18g02165 ARID 3e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g02165 - - gmx:102667655 1307.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g02165 18 55371622 55377062 Gma09g02358 09 48954536 48960048 GST
Gma18g02165 18 55371622 55377062 Gma07g00634 07 6510417 6513749 PCT
Gma18g02165 18 55371622 55377062 Gma16g00316 16 3321245 3324301 PCT
Gma07g00634 07 6510417 6513749 Gma18g02165 18 55371622 55377062 PCT
Gma16g00316 16 3321245 3324301 Gma18g02165 18 55371622 55377062 PCT