Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g02135 ATGGATCGTGGGGACCAAATGGCGTTATCCGGGTCTTACTATATGCAGCAAAGAGGAATACCTGGATCTGGAGCACCACCTGAGTTACATATTTCGCCTAATATGCGTCCAATCTCTAATCCAAATTTACCATTTCAATCCAGCATTGGTGGTGGTACCATTGGATCCACATTGCCATTGGAATCTTCAGCAATTTCAGCTCATGGTGTCAATGTGGGAGCTCCTACTGGGGCACCTCCAGGGGAACCTGTTAAGAGGAAGAGAGGAAGGCCTAGGAAATATGGAACCGACGGAAGTGTGTCATTGGCATTGACTCCAACTCCAACATCATCTAGCTATCCTGGAGCCTTGACACAAAGCCAGAAACGGGGCAGAGGGCGCCCACCCGGGACTGGGAAGAAACAGCAATTGGCTTCTCTTGGTGAATTGATGTCTGGTTCAGCTGGGATGGGATTCACTCCTCATATAATCAATATTGCAAGTGGAGAAGACATTACAACAAAAATCATGGCATTTTCTCAGCAGGGAGCTAGAGCTGTATGCATTTTGTCAGCCAATGGTGCTGTCTCTACTGTCACACTTCGTCAGCCATCAACTTCAGGTGGCACTGTCACATACGAGGGGCGCTTTGAGATAGTGTGTCTGTCAGGCTCTTACTTGGTCACCGATAATGGTGGCTCACGCAATCGAACTGGTGGATTGAGTGTGTCCCTTGCTAGTCCTGATGGTCGTGTCATTGGTGGTGGAGTTGGTGGAGTGCTTATTGCATCAAGTCCTGTTCAGGTGGTAGTTGGGAGTTTTCTATGGGGTGGATCAAAGACAAAGAACAAGAAAAAGGAATCCTCAGAAGGTTCAGAAGTTGCTGTGGAGTCAGATCACCAGGGAGTTCATAATCCAGTTTCACTGAATAGCAGCATCTCACCAAATCAAAACCTTCCTCCAACCCCCCCATCTTTAAATCCTTGGTCGACATCGCGTCCATTGGACATGCGTAATTCCCATGTTGACATCGATTTAATGCGTGGGTGA 1029 0.4772 MDRGDQMALSGSYYMQQRGIPGSGAPPELHISPNMRPISNPNLPFQSSIGGGTIGSTLPLESSAISAHGVNVGAPTGAPPGEPVKRKRGRPRKYGTDGSVSLALTPTPTSSSYPGALTQSQKRGRGRPPGTGKKQQLASLGELMSGSAGMGFTPHIINIASGEDITTKIMAFSQQGARAVCILSANGAVSTVTLRQPSTSGGTVTYEGRFEIVCLSGSYLVTDNGGSRNRTGGLSVSLASPDGRVIGGGVGGVLIASSPVQVVVGSFLWGGSKTKNKKKESSEGSEVAVESDHQGVHNPVSLNSSISPNQNLPPTPPSLNPWSTSRPLDMRNSHVDIDLMRG 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g02135 342 CDD DUF296 153 267 IPR005175 -
Gma18g02135 342 Gene3D - 154 297 - -
Gma18g02135 342 MobiDBLite consensus disorder prediction 1 42 - -
Gma18g02135 342 MobiDBLite consensus disorder prediction 100 119 - -
Gma18g02135 342 SMART AT_hook_2 85 97 IPR017956 GO:0003677
Gma18g02135 342 SMART AT_hook_2 122 134 IPR017956 GO:0003677
Gma18g02135 342 ProSiteProfiles PPC domain profile profile. 148 290 IPR005175 -
Gma18g02135 342 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 31 311 IPR039605 GO:0003680
Gma18g02135 342 SUPERFAMILY AF0104/ALDC/Ptd012-like 152 269 - -
Gma18g02135 342 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 31 311 - -
Gma18g02135 342 MobiDBLite consensus disorder prediction 69 136 - -
Gma18g02135 342 Pfam Plants and Prokaryotes Conserved (PCC) domain 154 267 IPR005175 -
Gma18g02135 342 MobiDBLite consensus disorder prediction 273 287 - -
Gma18g02135 342 MobiDBLite consensus disorder prediction 272 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g02135 Gma-Chr18 55008684 55014683 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g02135 1 342 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 49.589 1.46e-85 260
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g02135 - - gmx:100802542 625.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g02135 18 55008684 55014683 Gma18g02135 18 55008684 55014683 ECH
Gma18g02135 18 55008684 55014683 Gma09g02382 09 49186702 49194001 GST
Gma18g02135 18 55008684 55014683 Gma07g00661 07 6825444 6832122 PCT
Gma07g00661 07 6825444 6832122 Gma18g02135 18 55008684 55014683 PCT