Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g02126 ATGTCATTCACAGGAACTACAGATAAATGCAAGGCTTGTGATAAGACTGTTTATGTGGTTGACATGTTAACTCTTGAAGGTATACCTTACCATAAAAACTGCTTCAGATGCAGTCACTGCAAGGGATACCTAACGATGAACACCTACTCCTCAATGGATGGTGTCCTCTATTGCAAGCCACACTTTGAACAGCTTTTCAAGGAATCTGGCAATTTCAGCAAGAACTTTCAAACAGCAAAGTCTTCTGATAAACAAAATGAGACGAATAAGGCCCCCAACAGACTGTCATCCATGTTCAGTGGAACTCTAGACAAATGCTCAGTTTGTTCAAAAACAGTCTATCCTCTGGAAAAGATGACACTGGAAGGGGAATGCTATCACAAGAATTGCTTTAGGTGTGCTCATGCAGGTTGCCACCTCACACATTCCTCTTATGCTGCCCTGGATGGTGTCCTCTACTGTAGGCACCATTTCCAACAGCTTTTCATGGAGAAAGGGAACTATCATCATGTACTCCAATCTGCTAACCACAAGAAGAATGTCACTCCTGAACCTGCTGAACCTGCAGCTGAAGGAGATGAAGAGCCACCAAAGCCAGAAGAATCTGATTCTGAGGAACACACAGAAGAAAAGCCTCAAAATGAAGCATAG 651 0.4301 MSFTGTTDKCKACDKTVYVVDMLTLEGIPYHKNCFRCSHCKGYLTMNTYSSMDGVLYCKPHFEQLFKESGNFSKNFQTAKSSDKQNETNKAPNRLSSMFSGTLDKCSVCSKTVYPLEKMTLEGECYHKNCFRCAHAGCHLTHSSYAALDGVLYCRHHFQQLFMEKGNYHHVLQSANHKKNVTPEPAEPAAEGDEEPPKPEESDSEEHTEEKPQNEA 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g02126 216 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Gma18g02126 216 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Gma18g02126 216 Pfam LIM domain 10 65 IPR001781 -
Gma18g02126 216 Pfam LIM domain 106 161 IPR001781 -
Gma18g02126 216 SMART lim_4 105 157 IPR001781 -
Gma18g02126 216 SMART lim_4 9 61 IPR001781 -
Gma18g02126 216 ProSiteProfiles LIM domain profile. 104 164 IPR001781 -
Gma18g02126 216 PANTHER OS06G0237300 PROTEIN 1 209 IPR045268 GO:0051015
Gma18g02126 216 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Gma18g02126 216 MobiDBLite consensus disorder prediction 175 216 - -
Gma18g02126 216 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 209 - -
Gma18g02126 216 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 98 131 - -
Gma18g02126 216 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 132 171 - -
Gma18g02126 216 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Gma18g02126 216 CDD LIM1_SF3 6 68 - -
Gma18g02126 216 Gene3D Cysteine Rich Protein 102 170 - -
Gma18g02126 216 Gene3D Cysteine Rich Protein 4 74 - -
Gma18g02126 216 MobiDBLite consensus disorder prediction 191 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g02126 Gma-Chr18 54947176 54949110 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Gma18g02126 LIM 1.2e-09 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g02126 - K09377 gmx:100779513 427.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g02126 18 54947176 54949110 Gma18g02126 18 54947176 54949110 ECH
Gma18g02126 18 54947176 54949110 Gma09g02393 09 49274543 49276337 GST
Gma18g02126 18 54947176 54949110 Gma07g00672 07 6968663 6970649 PCT
Gma07g00672 07 6968663 6970649 Gma18g02126 18 54947176 54949110 PCT