Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g02101 ATGGGGGTTGGTGGTAATTTCTGGGACCTGCTAAAGCCCTATGCGCGCAAAGAGGGTTTTGATTTCTTGAGGAACAAGCGAGTTGCAGTGGACCTTTCGTTCTGGATTGTTCAGCACGAGAATGCCATCAAGGCCACGCATGTCAGAAACCCCCATCTAAGGCTTACCTTCTTCCGCACCATCAATCTTTTCTCCAAGTTTGGAGCACTTCCGGTGTTCATTGTTGATGGGACTCCATCACCGTTAAAATCACGGGCCAGGATTGTGAGATATTTCCGGTCTTCTGGCATTGAATTGGCTAGCTTGCCGGTGCCTGAAGAAGGTGTTTCAGCTGAGAGGAACCACATGTTTTCAAGTCATGTTCAAAAATGTGTGGAACTGGTTGAACTACTTGGAATGCCTGTGCTAAAGGCTAAAGGAGAGGCTGAATCACTCTGTGCTCAATTAAATAGTGAAGGTCATGTAGATGCTTGCATCACAGCCGACAGTGATGCATTCCTCTTTGGGGCCAACTGCATTATAAAATGTTTCTGTCCCAACTTCAAAGAACCATTTGAATGCTACAATATGTCTGATATTGAAGCTGGACTTGGATTGAAGAGGAAACACTTAATAGCTATCTCTCTTTTGGTTGGAAATGATCATGATATAAAGGGTGTTCGAGGGATTGGGCTTGATACTGCACTTCGTTTTGTTAAGGCTTTTAGTGAAGAAGATATATTGAATAGATTACATGAGATAGGCAAAGGGAATACTTCACAAATTCCCATCTTCATTAAATTTGAGGATGATATGGATATGGATGGGAACTCCCTAAATAGAAAACAATCTCACTGTTCACTCTGTGGGCATCCAGGCAGCAAAAAAGATCATATGAAATTTCCCTGTGAATTTTGTGTCACAAAGGCTGATGAAGGTTGCCAGAGAAAACCAGAGGATTTTAAATGTGATTGCTTCTCCTGTGATATGAATAGGAAACATAAGGAGAAAAAAAGACTGAAAAATTGGCACACAAAAATTTGTCACAAGATTGCAGAGGAGCCAAACTTTCCCAAGAATGAAATCATTGATATGTATTTGTGCAATGACAATGCAAGTGATGGCCCACACATTGTATGGGGAAAACCGAATATTGAGATGCTGATTGATTTTTTAAACTTCCATCAGCATTGGGAACCAGCTTACGTTCGACGGATGATGTTTCCTATGATGTCAACCATCTTTTTGAGAGATATGACAACAACTACAGAAGAGACTATGTTATTTGGGCAATATCAGTTTGATTCCATAGAACGTGTCAAGATGAGATATGGATACCAATTTTTTGTGGTCAAGTGGAAACATGCAGGGGTTAACATTTCCTGTAAAGTTCCATTGAAGGAATCAAGTGTGCAACAGGATGCTATAATAGAGCTTGATGAAACGGTGGATCTACTGGATGACTGTGATGTTCCAGAGATTCATGAAGACAGTGGGTGTCGTTTTCTGCTTACAGATGAAAATATGGACCTTGTAGGTGCTGCTTTTCCAGCAGAAGTCAAAAGGTTTTGGCAAGACCAGGAACTGAAAAGAAGAAAGAACTCAACATCAAGATCTCAAGAAAATGAAAAATCACCATCACCAAACTCAAGAAGTATTCAGCTAAACATTACAGAGTTCTACCCATCAACCAAAGTTAAACATCGTCAATCAAAACAAGGAGGAGGAGAGTCATCCAAGATTGCTGATAGTCAAGGCAATGAGGGCTCAAAAATGAAAAGGAAAATGTCAAGTCCTGATAAGATTCCAAAATCTGTGAGGCGTCGCCTTTTGTTTGATTAG 1821 0.4064 MGVGGNFWDLLKPYARKEGFDFLRNKRVAVDLSFWIVQHENAIKATHVRNPHLRLTFFRTINLFSKFGALPVFIVDGTPSPLKSRARIVRYFRSSGIELASLPVPEEGVSAERNHMFSSHVQKCVELVELLGMPVLKAKGEAESLCAQLNSEGHVDACITADSDAFLFGANCIIKCFCPNFKEPFECYNMSDIEAGLGLKRKHLIAISLLVGNDHDIKGVRGIGLDTALRFVKAFSEEDILNRLHEIGKGNTSQIPIFIKFEDDMDMDGNSLNRKQSHCSLCGHPGSKKDHMKFPCEFCVTKADEGCQRKPEDFKCDCFSCDMNRKHKEKKRLKNWHTKICHKIAEEPNFPKNEIIDMYLCNDNASDGPHIVWGKPNIEMLIDFLNFHQHWEPAYVRRMMFPMMSTIFLRDMTTTTEETMLFGQYQFDSIERVKMRYGYQFFVVKWKHAGVNISCKVPLKESSVQQDAIIELDETVDLLDDCDVPEIHEDSGCRFLLTDENMDLVGAAFPAEVKRFWQDQELKRRKNSTSRSQENEKSPSPNSRSIQLNITEFYPSTKVKHRQSKQGGGESSKIADSQGNEGSKMKRKMSSPDKIPKSVRRRLLFD 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g02101 606 Pfam XPG I-region 132 214 IPR006086 GO:0004518
Gma18g02101 606 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 25 39 IPR006084 -
Gma18g02101 606 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 71 90 IPR006084 -
Gma18g02101 606 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 128 145 IPR006084 -
Gma18g02101 606 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 149 169 IPR006084 -
Gma18g02101 606 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 204 219 IPR006084 -
Gma18g02101 606 MobiDBLite consensus disorder prediction 520 606 - -
Gma18g02101 606 CDD PIN_GEN1 2 203 - -
Gma18g02101 606 MobiDBLite consensus disorder prediction 580 606 - -
Gma18g02101 606 Pfam XPG N-terminal domain 1 88 IPR006085 GO:0004518
Gma18g02101 606 Gene3D - 3 198 - -
Gma18g02101 606 Gene3D - 199 260 - -
Gma18g02101 606 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 593 IPR006084 -
Gma18g02101 606 SMART xpgineu 129 199 IPR006086 GO:0004518
Gma18g02101 606 MobiDBLite consensus disorder prediction 533 579 - -
Gma18g02101 606 PANTHER FLAP ENDONUCLEASE GEN-LIKE 1 1 593 - -
Gma18g02101 606 SMART xpgn3 1 97 IPR006085 GO:0004518
Gma18g02101 606 SUPERFAMILY PIN domain-like 6 214 IPR029060 -
Gma18g02101 606 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 199 412 IPR036279 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g02101 Gma-Chr18 54733175 54738280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g02101 16 246 Core DNA Replication Machinery Family AT5G26680 28.287 2.01e-16 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g02101 K15338 - gmx:100791251 1254.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g02101 18 54733175 54738280 Gma18g02101 18 54733175 54738280 ECH
Gma18g02101 18 54733175 54738280 Gma09g02415 09 49470611 49475175 GST