Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g02089 ATGGTATTTCAGAGCCACTGTTGTTATAATGTAGTGGGTACACCATTCATTTTTCTAGCTGATGGACTTCCATCAAGAGGATTAGTGCAAAGAATGGCCTGTGATGGAGGTGAGCATTTGTCTTTGCCTGCGGGGGCAACGACACTCGAAAGATTTATGGTTGAAGATGAACAGGAGGATCCATGTGCCATATGCATCAAGGATTTCAACTCTGGTGATAATGCAGCAAGGTTGCCTTGCTCTCATGTCTTCCACCCTGATTGTATTTTGCAATGGTTTGTTCAGAAGAGTACGTGCCCTTTGTGCTGTTTCGCTTGTAGTCGTGTCTCTTGA 333 0.4444 MVFQSHCCYNVVGTPFIFLADGLPSRGLVQRMACDGGEHLSLPAGATTLERFMVEDEQEDPCAICIKDFNSGDNAARLPCSHVFHPDCILQWFVQKSTCPLCCFACSRVS 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g02089 110 ProSiteProfiles Zinc finger RING-type profile. 62 102 IPR001841 -
Gma18g02089 110 Pfam Ring finger domain 62 102 IPR001841 -
Gma18g02089 110 PANTHER SI:CH211-59O9.10 43 106 - -
Gma18g02089 110 SUPERFAMILY RING/U-box 56 106 - -
Gma18g02089 110 PANTHER SI:CH211-59O9.10 43 106 - -
Gma18g02089 110 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 39 107 IPR013083 -
Gma18g02089 110 SMART ring_2 62 102 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g02089 Gma-Chr18 54461763 54462095 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g02089 23 104 C3H Transcription Factor Family AT1G14200 32.955 2.63e-13 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g02089 - K22378 gsj:114396617 194.897