Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g02084 ATGCAAAACCCAAACCCATCATCATCTTCTCCCCCTTCCCCTCCTTGGTTGGACTCAGCCCCGTTCATCCACCGGAGCCGCCACCTCCTCCGCCGCGCGCCGCCGCCCCTACACACGGCGGCGACCTTCTTCCGGCGCGCGAGCGGGCGGCGCATGATGCTGCGGGAGCCGTCGGTGCGCATGCGGGAGGCGGCGGCAGCGGAGGTGGAGGGCCGGCAGAGCGAGTGGGCCTACTCGCGGCCGGTGGTGGCGCTCGACGTCGCGTGGAATGCCGTGTTCCTCGCGATCGGCGCGTCGGTGCTAGCGCTGAGCACCGACGAGGACCCCTGCGTGCCGCTCAGGGCGTGGATTGTGGGGTACCTGCTGCAGGGCGCGTTGCACTCTCTCTGCGTTGTTGCTGAGTTCACAAGAAGAAGAAGAAGAAGAGTGAGTGGGACCCACCCCGGTTCTAACGTGGTGGGCCACGTTCAATGGAGCTTCAGTTCCGAGAGTGACGAAGAGTTTTATCCTCCGGAACAGTTTCTCGAGGGTGACGGAAACAGCATCACAAAGCATATAGAAACCGTGAATACCATGCTTTCATTCATATGGTGGATTGTCGGGTTCTACTGGGTAACTGCTGGTGGCCAAAGTTTGACAAGGGATTCACCTCAGCTTTACTGGCTCTGTATCACATTTCTTGCTTTCGACGTCGTGATTGTACTCATCTGTGTTTCTGTTGCATGTCTTATTGGAATCGCAGTTTGCTGTTGTTTGCCATGCATACTTGCCATTCTTTATGTAGTGGCAGATCCGGAAGGGGCAACGAAGGAAGAGATTGACCAGTTGCCAAAATATAAGTTTAGAATAATAAAGGAATTTAAGAAAGAAGGTGATATTGAAGAATCTTCAAGAGGAATAATGACCGAAACTGAGAGTGAGACAGCCGCCGAACATGTTATTGCCTTAGAAGATGCAGAATGCTGCATCTGCCTTTCTGCCTATGATAATGATGCTGAGCTCAGAGAACTTCCTTGCAACCACCATTTTCACTGTACATGCATAGACAAATGGCTGCTAATCAATGCTACCTGCCCTCTCTGCAAGTTTAACATTTTGAGGACTGGCAACCACTATCAAGAAGTTTGA 1128 0.531 MQNPNPSSSSPPSPPWLDSAPFIHRSRHLLRRAPPPLHTAATFFRRASGRRMMLREPSVRMREAAAAEVEGRQSEWAYSRPVVALDVAWNAVFLAIGASVLALSTDEDPCVPLRAWIVGYLLQGALHSLCVVAEFTRRRRRRVSGTHPGSNVVGHVQWSFSSESDEEFYPPEQFLEGDGNSITKHIETVNTMLSFIWWIVGFYWVTAGGQSLTRDSPQLYWLCITFLAFDVVIVLICVSVACLIGIAVCCCLPCILAILYVVADPEGATKEEIDQLPKYKFRIIKEFKKEGDIEESSRGIMTETESETAAEHVIALEDAECCICLSAYDNDAELRELPCNHHFHCTCIDKWLLINATCPLCKFNILRTGNHYQEV 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g02084 375 PANTHER TARGET OF ERK KINASE MPK-1 6 375 - -
Gma18g02084 375 CDD RING-H2_RNF111_like 320 364 - -
Gma18g02084 375 Pfam Ring finger domain 320 362 IPR001841 -
Gma18g02084 375 ProSiteProfiles Zinc finger RING-type profile. 321 362 IPR001841 -
Gma18g02084 375 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 297 367 IPR013083 -
Gma18g02084 375 SUPERFAMILY RING/U-box 308 367 - -
Gma18g02084 375 SMART ring_2 321 361 IPR001841 -
Gma18g02084 375 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 6 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g02084 Gma-Chr18 54375960 54380385 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g02084 9 373 C3H Transcription Factor Family AT1G68070 45.902 6.20e-106 313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g02084 18 54375960 54380385 Gma18g02084 18 54375960 54380385 ECH
Gma18g02084 18 54375960 54380385 Gma09g02432 09 49632577 49637736 GST