Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g02074 ATGGTGAGAGGAAAGACTCAGATGAGGCGCATAGAGAACGCCACAAGCAGGcaagtcaccttctcaaagcggcgtaatgggttgctgaagaaggcctttgaactttctgttctttgtgatgctgaggttgctctcatcattttctctccAAGAGGAAAGCTTTATGAATTTGCAAGCTCCAGCATGCAGGACACAATTGAACGCTACCGCAGGCATAACAGGAGTGCTCAAACAGTGAACAGATCTGATGAACAAAATATGCAGCATTTGAAGCAAGAAACAGCAAACTTGATGAAGAAGATTGAGCTTCTTGAGGCTTCAAAACGGAAGCTCTTGGGAGAAGGTTTGGGGTCATGCTCCTTAGAAGAACTGCAACAGATAGAACAACAATTGGAAAGGAGTGTAAGCAATGTTCGTGCAAGAAAGAATCAAGTTTACAAGGAACAAATTGATCAACTAAAAGAGAAGGAAAGAGCTCTATATGCTGAAAATGCTAGGCTGTGTGAGCAGTATGGTATCCAGCCACAGCCAGCAACAAAGGATCCGAAAGAAATTCAACCCTATGCAGAAAGCAGTCCAAGTTCAGAAGTGGAGACTGAATTGTTCATTGGACTACCCAGGTCTATCTAG 630 0.3651 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFASSSMQDTIERYRRHNRSAQTVNRSDEQNMQHLKQETANLMKKIELLEASKRKLLGEGLGSCSLEELQQIEQQLERSVSNVRARKNQVYKEQIDQLKEKERALYAENARLCEQYGIQPQPATKDPKEIQPYAESSPSSEVETELFIGLPRSI 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g02074 209 CDD MADS_MEF2_like 3 78 IPR033896 GO:0000977|GO:0045944
Gma18g02074 209 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gma18g02074 209 Coils Coil 121 170 - -
Gma18g02074 209 Gene3D - 14 96 IPR036879 GO:0003677|GO:0046983
Gma18g02074 209 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gma18g02074 209 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gma18g02074 209 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gma18g02074 209 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gma18g02074 209 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gma18g02074 209 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gma18g02074 209 MobiDBLite consensus disorder prediction 174 197 - -
Gma18g02074 209 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gma18g02074 209 Coils Coil 73 107 - -
Gma18g02074 209 Pfam K-box region 83 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gma18g02074 209 PANTHER MADS BOX PROTEIN 1 206 - -
Gma18g02074 209 PANTHER MADS-BOX PROTEIN SOC1 1 206 - -
Gma18g02074 209 SUPERFAMILY SRF-like 3 84 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g02074 Gma-Chr18 54213739 54232056 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g02074 1 156 MADS-box Gene Family AT2G45660 78.846 3.58e-88 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gma18g02074 K-box 8.2e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g02074 - - gmx:100037477 397.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g02074 18 54213739 54232056 Gma09g02436 09 49698801 49713886 GST
Gma18g02074 18 54213739 54232056 Gma07g00727 07 7664050 7682928 PCT
Gma07g00727 07 7664050 7682928 Gma18g02074 18 54213739 54232056 PCT