Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g02072 ATGGGTAGAGGAAAGGTTGAGCTGAAGAGGATTGAGAACAAAATCAATCGCCAAGTTACCTTCTCCAAAAGAAGGAATGGTTTGGTGAAGAAAGCCAAAGAGCTCTCAGTGCTGTGTGATGCAGAGGTTGCCCTTGTCATTTTCTCAGCTCGTGGCAAGCCCTTCACCTTTCCAGACGATGCTGAAAGtattatgaaaacctatGATCGATACCGGAAGTACTACTCTCATCAACATGGCAATATTGAACTTGAAAATCAGGACTGGTACCAAGAAATGTTAAAGCTAAATGAAAAGTGTGAGTCTCTTCAAAGGACACAAAGGCTTCTGCACGGGGAAGATCTTGGACCACTGAGCATAAAAGAGTTACTAATTCTTGAAGAGCAACTTGAAAAAGCTTTATCACAAGCTAGGCAGAGGAAGACACAACTGATGATTAAACAAATGGAAGAGCTTCGTCAAAAGGAACGCCATCTTGAAGACCTGAATAAAGAACTTAGACTCAAGCCTCCTTTTCAGCTTGAGCCTTATGGATTTAATCTCAAAGCAAGCCTGTGGGGCTCTACTTCCTCTGCTGATGGCGATGGGAGCTTTCCCTTGCAGCCTTCCTTAACCTACCCTGAACCTTTCTTGCAAATAGGGTATTCTGTTCAAGGTGAGCCATCCATTGTCCCAAAGAGCATGGCCAGTGAGACTAATTTTCAGGGATGGTTCCTTTGA 720 0.4306 MGRGKVELKRIENKINRQVTFSKRRNGLVKKAKELSVLCDAEVALVIFSARGKPFTFPDDAESIMKTYDRYRKYYSHQHGNIELENQDWYQEMLKLNEKCESLQRTQRLLHGEDLGPLSIKELLILEEQLEKALSQARQRKTQLMIKQMEELRQKERHLEDLNKELRLKPPFQLEPYGFNLKASLWGSTSSADGDGSFPLQPSLTYPEPFLQIGYSVQGEPSIVPKSMASETNFQGWFL 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g02072 239 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gma18g02072 239 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gma18g02072 239 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gma18g02072 239 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gma18g02072 239 CDD MADS_MEF2_like 2 74 IPR033896 GO:0000977|GO:0045944
Gma18g02072 239 Pfam K-box region 85 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gma18g02072 239 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677|GO:0046983
Gma18g02072 239 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gma18g02072 239 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gma18g02072 239 ProSiteProfiles K-box domain profile. 86 180 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gma18g02072 239 Coils Coil 86 106 - -
Gma18g02072 239 Coils Coil 120 169 - -
Gma18g02072 239 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Gma18g02072 239 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 181 - -
Gma18g02072 239 PANTHER MADS-BOX TRANSCRIPTION FACTOR 6 1 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g02072 Gma-Chr18 54198129 54204023 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g02072 1 239 MADS-box Gene Family AT2G45650 55.469 8.80e-80 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gma18g02072 K-box 6.6e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g02072 K09264 - gmx:100813753 454.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g02072 18 54198129 54204023 Gma18g02072 18 54198129 54204023 ECH
Gma18g02072 18 54198129 54204023 Gma09g02438 09 49721879 49727253 ECH
Gma05g00480 05 4560012 4567301 Gma18g02072 18 54198129 54204023 ECH
Gma17g01233 17 10881833 10890808 Gma18g02072 18 54198129 54204023 ECH