Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g02057 ATGGCGACTAATCTTCCTGCAACGAAGTCCACCACGACGACGTCGTCTCAGGAGAAACGACACCGTTCGATCTTCGAAGTTCCACCGAACTTCTTCGACTCTTGTCGTCTTCTCCCTTCTCCTCACTCATCCGTTTCCGACCACCACAGCGTAGGCCAAACCCAAATCATCGAAACATCCTCAAACGACGACTTCGTTTTGGATGCCCCTCAAAACGCCGTCGTTTCCGCGCCTAGGTGGACCTGCAATACCTGCAAGACTCAATTCGATTCCCTTCAGGACCAGCGTTCCCATTTCAAATCCGACATTCATCGATTCAATGTGAAGCTGACAATTGCTGGAAAGAATATTGTGAAGGAAGAAGATTTTGAGGTTCTAACATCTGAATTTGTCAAAGACTATGATGTGTCAAGTATATCGGGATCAGAAAGTGACGATGATAGTGAAACCGAGTCTCAGAGTCAAAGTGCATTGCATGACAAATTGAGCGAAAGTTTTAAACATAAACTATTCTTCCGTCTTCAGACAGGGCAGAGAGTTTCTGTCTGGAAGTGCTTGATTATGAATGTGACTGAAAATGTATTATATGATAATGAAAAGGCAGAGAATGAAGTGGTTGAGAAGTTGAAATCTTTGACTGCTGAGCCCAGAGACAATACCCATTTGAGAATTGTTCTGCTTGTGTCCGGTGGACACTTTGCAGGTTGCGTCTTTGATGGTGATGCTGTTGTGGCTCACAAGACATTTCACAGATATGTTGTAAGGGCCAAGGCAGGAAAAAAACAATCGTCTAAAGATGCTTCTGGAAGGGCTGCTCATTCTGCTGGGGCTTCACTTCGTCGATATAATGAACTTGCATTAAAGAAGGAAGTTCATGAACTGTTTGCTGCTTGGAAACCTTATTTTGATGCTTCCAATAGCATTTTTATACATGCACCATCAAGTAGTCGTCAACTTCTTTATGATGGAGAGAGATCATACTTTACCAATCAGCAATGTGATATTAGAAATATTGCTTTGACTGTTCGGAGGCCTACTTTCAGGGAAGCAAAACGTGTATATAGCCAGTTGACCCAGGTAACCCATGAAGGCGATGAGAAGGAAGTTTTGCAAAGAAACCAAGAGGATTCGGTATCAATTCACATTTCTAAAATAAATGTCAGTCCAACCTTAAGCAAGGGGGACATGGCTGAGTTGGATGACAAAAATAAAGCTGAAGCTTGTTCAAGTAAACAAAATGATGAACTCCCAATTTTGAGTAATGGAGAAAGTGAGGATGAGCTATTTGGTAAATCAACTCCTTTACATCAGGCAGCACAATCGGGTGACTCTCTAAAGGTTTTAGAGTTCTTGGAAAAGGGTTTGGATCCTTGCATCAAAGATGAAAGGGGGAGGACCCCGTATATGTTGGCACATGACAAAGAAGTGAGGGATACTTTCAGAAGGTTTATGGCATCAAATCTTGACAAATGGGATTGGCAAGCTGCAAAAGTGCCCAGTGCATTGACCAAAGAAATGGAAGAATCACAAGCTGCTAAGCAGGCAGAAAAAGATGCTAAGAGAAAAGCTAGAGCAAAAGAATTAAAGAAATTGCGTAAAGCAAAAGAAAAGAAGGCTCAGGTTGAAGCCACCTTGCCTAAGAATGATTCCAAAACTATAGAGAAGCAAGTAACTGCTTCAACATCGATTAAGGGACAATCTCAACTAAAAAGTGGTGTGCAATTATCCAAAGAGGACCAAATAAGAATGGCACAGGCTGCTGAAAGAGAAAAGAGAGCAGCTGCTGCAGAGAGGAGAATAGCCGCCCTCAAAATTCAAGCTAATAGTGCAATCACTGCAGCTAGCATGTCAGAACCTAAATGTGGATTAGCAGGTGACATTTACTGTTCCTGTTGTAATTCATCACTTGATGGTAAAGTTCCATTCCACCGGTATAATTACAAATACTGCAGCACATCATGCATGCATGTACACAGGGAGATCCTAGAAGATCAATGA 1998 0.4214 MATNLPATKSTTTTSSQEKRHRSIFEVPPNFFDSCRLLPSPHSSVSDHHSVGQTQIIETSSNDDFVLDAPQNAVVSAPRWTCNTCKTQFDSLQDQRSHFKSDIHRFNVKLTIAGKNIVKEEDFEVLTSEFVKDYDVSSISGSESDDDSETESQSQSALHDKLSESFKHKLFFRLQTGQRVSVWKCLIMNVTENVLYDNEKAENEVVEKLKSLTAEPRDNTHLRIVLLVSGGHFAGCVFDGDAVVAHKTFHRYVVRAKAGKKQSSKDASGRAAHSAGASLRRYNELALKKEVHELFAAWKPYFDASNSIFIHAPSSSRQLLYDGERSYFTNQQCDIRNIALTVRRPTFREAKRVYSQLTQVTHEGDEKEVLQRNQEDSVSIHISKINVSPTLSKGDMAELDDKNKAEACSSKQNDELPILSNGESEDELFGKSTPLHQAAQSGDSLKVLEFLEKGLDPCIKDERGRTPYMLAHDKEVRDTFRRFMASNLDKWDWQAAKVPSALTKEMEESQAAKQAEKDAKRKARAKELKKLRKAKEKKAQVEATLPKNDSKTIEKQVTASTSIKGQSQLKSGVQLSKEDQIRMAQAAEREKRAAAAERRIAALKIQANSAITAASMSEPKCGLAGDIYCSCCNSSLDGKVPFHRYNYKYCSTSCMHVHREILEDQ 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g02057 665 MobiDBLite consensus disorder prediction 504 553 - -
Gma18g02057 665 Pfam Bacteroidetes VLRF1 release factor 224 362 IPR041175 -
Gma18g02057 665 Pfam Vms1-associating treble clef domain 628 661 IPR041540 -
Gma18g02057 665 Gene3D - 407 544 IPR036770 -
Gma18g02057 665 PANTHER ANKYRIN REPEAT AND ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 15 661 - -
Gma18g02057 665 Coils Coil 506 544 - -
Gma18g02057 665 ProSitePatterns Zinc finger C2H2 type domain signature. 82 104 IPR013087 -
Gma18g02057 665 SUPERFAMILY Ankyrin repeat 432 485 IPR036770 -
Gma18g02057 665 MobiDBLite consensus disorder prediction 407 430 - -
Gma18g02057 665 MobiDBLite consensus disorder prediction 509 523 - -
Gma18g02057 665 MobiDBLite consensus disorder prediction 1 22 - -
Gma18g02057 665 ProSiteProfiles Ankyrin repeat profile. 430 462 IPR002110 GO:0005515
Gma18g02057 665 MobiDBLite consensus disorder prediction 137 158 - -
Gma18g02057 665 Coils Coil 577 606 - -
Gma18g02057 665 SUPERFAMILY beta-beta-alpha zinc fingers 78 111 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g02057 Gma-Chr18 53913599 53919256 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g02057 19 612 C2H2 Transcription Factor Family AT1G01930 53.125 0.0 573
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g02057 K26089 - gmx:100808912 1172.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g02057 18 53913599 53919256 Gma18g02057 18 53913599 53919256 ECH
Gma18g02057 18 53913599 53919256 Gma09g02450 09 49865161 49871078 GST