Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g02052 ATGGCGTCGAACCGTAACGGCTTCCAAAGGGGAAGCGCCAAGTTCGATCGCCCTCTCAAGTCCCGCCCCCGCCCATCCTCCCCCTCGCCGGGATCCGCCCTTCGCCGCCCCAACGCCGCCGCACGTAACGGCGACGCCGTTCCTGGAAGAGTTCGAGTGGCAGTAAGATTGAGACCACGGAATGCTGAAGAAATGATGGCGGATGCTGATTTTGCTGACTGTGTTGAATTACAACCAGAGCTTAAAAGACTGAAACTTCGTAGAAACAATTGGGATTCTGACACTTATGAGTTTGATGAGGTGCTTACCGAATTTGCATCACAGAAACGTGTCTATGAAGTTGTGGCTAAGCCAGTTGTGGAGAGTGTTCTTGATGGTTATAATGGGACTGTGATGGCTTATGGTCAAACTGGAACTGGGAAAACTTTTACACTTGGACGACTGGGGGAAGTAGATGCCTCTGACCGTGGTATAATGGTTCGTTCCATGGAGGATATTTTTGCTGACTTATCACCAGATACCGATTCTGTCACTGTCTCTTATCTGCAGCTTTACATGGAGACTCTCCAGGACTTGCTGAATCCAGCAAATGATAATATTCCTATAGTGGAAGACCCAAGAAGTGGTGACGTATCTATGCCCGGGGCAACTCTTGTAGAAATCACAGACCAACATAGTTTTTTGGAGTTGTTAAGAGTAGGTGAAGCTAATCGAATCGCTGCTAACACAAAATTGAATACTGAATCTTCTCGCAGTCATGCCATGCTAATGGTTCATATTAAGAGATCTGTCTTGGAAAATGAAGATATGTCTAGTCAAAATGGTGATGCCTCTCATTTGACTAAACCTTCAAAACCACTTGTTCGGAAGAGCAAGTTGGTTGTGGTAGACTTGGCAGGTTCAGAACGCGTCCATAAGTCAGGAAGTGAAGGGCACATGCTAGAGGAAGCTAAATCTATCAATCTTTCACTTAGTTCACTGGGAAAATGTATTAATGCTCTAGCAGAGAACAATGCTCATGTTCCATTTCGTGATTCGAAGCTTACCAGGATGCTTCGAGATTCTTTTGGAGGCACAGCTAGGACTTCATTGATTGTGACTATTGGCCCATCTCCACGTCATCGAGGAGAGACTTCTAGTACCATATTGTTTGGCCAAAGGGCTATGAAAGTTGAGAATATGCTGAAAATAAAGGAAGAATTTGATTATAAAAGCTTGTCTCGAAAGCTTGAGATACAATTAGATAAGCTTATTGCAGAAAATGAAAGACAACAGAAAGCTTTTGAGGATGAAGTTGAAAAAGTAAATTTTGAGGCACAATGTCGTATTGCTGAGGTTGAGAGGAACTTTGCAGATGCATTAGAGAAAGAGAGACTGAAATGCCAGATGGAGTACATGGAATTGGTAAAGGAGCTGGAGCAGAAGTTGGTTTTGAATCAAGAACGACACGACTGTAATAgttttgtggctgataatgaagagGGGCCTGCATCATCTTCTACAGATGACGTTGCTGAGGTCAAAATGCTGCTTGAAACTGAAAGAAATCGGAGGAAGGCAGCTGAAGAAGAGGTAGAACATCTAAAAAGTCAGCTGGGGAAACATACACAAGCAGAGGCAGGAGGTGATGTGGAGATTATAAAGCTTCGCAACCTCCTGGAGGACGAGGCTAATCAGAAAAAAAGACTTGAAGAAGAAATCATATTACTAAGGAGTCAATTATTGCAATTGAACTTTGAAGCTGACCAGATGAGAAGGTGTTTGGATGGAAGCTCTGGAAGCACATATTCTGCCATGGATTCCTCCACGACTCAAGTTAGGCATTCCCAATTCAAGGATGTTGCGAATGGTCAAAAGTCATCTGTTGCTACACTCTTTGAGCAAGTTGGATTGCAAAAGATTTTGTCATTGCTGGAGTCAGATGATGCCAATGTACGAATTCATGCCGTGAAAGTGGTGGCCAACTTAGCGGCTGAAGAGGCTAATCAAAAGAGAATTGTTGAAGCTGGTGGTCTTACTTCCTTGTTGATGCTTCTTCGAAGATATGAGGATGAAACTGTTCGCAGAGTAGCTGCTGGGGCAATTGCCAATCTTGCTATGAATGAAGCAAATCAAGAACTTATTATGGCTGAAGGAGGAATTACACTGTTATCAATGACTGCATCTGATGCTGAAGATCCACAAACTCTTCGAATGGTTGCTGGAGCAATTGCTAACCTATGTGGAAATGATAGAATATTGATGACCCTGAGATCTCAGGGAGGTATTAAGGCTTTACTGGGAATTGTAAGATGCGGACATCCTGATGTTCTTTCCCAAGTTGCACGAGGAATTGCTAACTTTGCAAAATGCGAGTCTCGTGCATCTAATCAAGGGATAAAAAGTGGCAGATCCTTTTTGATAGAAGATGGTGCCCTTCCGTGGATAGTACAAAATGCTAATAATGAAGCTGCACCAATCCGGCGTCACATTGAGCTTGCACTCTGCCACTTGGCACAACATGAAGTGAATGCAAAGGACTTGATTAGTGGAGGTGCTCTTTGGGAGCTTGTCCGGATTTCTCGAGATTGTTCACGGGAGGACATACGAAACCTTGCTCGTCGAACTCTCAGTTCTGTCTCAACATTTAAATTGGAATTGCGGCGATTGCGTATAGATTTTTAA 2664 0.4332 MASNRNGFQRGSAKFDRPLKSRPRPSSPSPGSALRRPNAAARNGDAVPGRVRVAVRLRPRNAEEMMADADFADCVELQPELKRLKLRRNNWDSDTYEFDEVLTEFASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTLGRLGEVDASDRGIMVRSMEDIFADLSPDTDSVTVSYLQLYMETLQDLLNPANDNIPIVEDPRSGDVSMPGATLVEITDQHSFLELLRVGEANRIAANTKLNTESSRSHAMLMVHIKRSVLENEDMSSQNGDASHLTKPSKPLVRKSKLVVVDLAGSERVHKSGSEGHMLEEAKSINLSLSSLGKCINALAENNAHVPFRDSKLTRMLRDSFGGTARTSLIVTIGPSPRHRGETSSTILFGQRAMKVENMLKIKEEFDYKSLSRKLEIQLDKLIAENERQQKAFEDEVEKVNFEAQCRIAEVERNFADALEKERLKCQMEYMELVKELEQKLVLNQERHDCNSFVADNEEGPASSSTDDVAEVKMLLETERNRRKAAEEEVEHLKSQLGKHTQAEAGGDVEIIKLRNLLEDEANQKKRLEEEIILLRSQLLQLNFEADQMRRCLDGSSGSTYSAMDSSTTQVRHSQFKDVANGQKSSVATLFEQVGLQKILSLLESDDANVRIHAVKVVANLAAEEANQKRIVEAGGLTSLLMLLRRYEDETVRRVAAGAIANLAMNEANQELIMAEGGITLLSMTASDAEDPQTLRMVAGAIANLCGNDRILMTLRSQGGIKALLGIVRCGHPDVLSQVARGIANFAKCESRASNQGIKSGRSFLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAKDLISGGALWELVRISRDCSREDIRNLARRTLSSVSTFKLELRRLRIDF 887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g02052 887 Coils Coil 451 471 - -
Gma18g02052 887 Coils Coil 546 580 - -
Gma18g02052 887 MobiDBLite consensus disorder prediction 1 47 - -
Gma18g02052 887 Gene3D - 613 884 IPR011989 -
Gma18g02052 887 PANTHER KINESIN-RELATED 32 879 IPR027640 GO:0003777|GO:0007018
Gma18g02052 887 PRINTS Kinesin heavy chain signature 126 147 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Gma18g02052 887 PRINTS Kinesin heavy chain signature 292 310 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Gma18g02052 887 PRINTS Kinesin heavy chain signature 341 362 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Gma18g02052 887 SMART arm_5 659 700 IPR000225 GO:0005515
Gma18g02052 887 SMART arm_5 619 658 IPR000225 GO:0005515
Gma18g02052 887 SMART arm_5 743 783 IPR000225 GO:0005515
Gma18g02052 887 SMART arm_5 833 875 IPR000225 GO:0005515
Gma18g02052 887 SMART arm_5 701 742 IPR000225 GO:0005515
Gma18g02052 887 Gene3D Kinesin motor domain 43 422 IPR036961 -
Gma18g02052 887 ProSitePatterns Kinesin motor domain signature. 291 302 IPR019821 GO:0003777|GO:0005524|GO:0007018
Gma18g02052 887 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 50 426 IPR027417 -
Gma18g02052 887 ProSiteProfiles Kinesin motor domain profile. 50 391 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Gma18g02052 887 Coils Coil 504 538 - -
Gma18g02052 887 Coils Coil 407 438 - -
Gma18g02052 887 CDD KISc 50 389 - -
Gma18g02052 887 Pfam Kinesin motor domain 56 391 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Gma18g02052 887 PANTHER KINESIN-LIKE PROTEIN 32 879 IPR033291 GO:0008017|GO:0032886|GO:0048364
Gma18g02052 887 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 670 713 IPR000225 GO:0005515
Gma18g02052 887 SMART kinesin_4 48 399 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Gma18g02052 887 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 629 671 IPR000225 GO:0005515
Gma18g02052 887 Pfam Armadillo/beta-catenin-like repeat 662 699 IPR000225 GO:0005515
Gma18g02052 887 SUPERFAMILY ARM repeat 616 874 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g02052 Gma-Chr18 53865268 53876289 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g02052 49 424 Calmodulin-binding Proteins AT5G65930 34.351 2.27e-47 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g02052 - K10396 gmx:100779873 1686
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g02052 18 53865268 53876289 Gma18g02052 18 53865268 53876289 ECH
Gma18g02052 18 53865268 53876289 Gma09g02454 09 49902707 49914637 GST