Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g02043 atggaaggaagagaaggcttcagttctggggttacagtgataggggcagaagctccatcagcctatcatatggcaccaaggagtgaagctccaagtcaggttcctcctcctgttcctgaagcaacagctggagctattggtgtctcacctgtgagTGTGGGATTGGATGGAACAGCAGCTAAGAAGAAAAGGGGTAGACCAAGGAAATACGGGCCAGATGGGTTGAACTCTATGGCATTGTCACCCATGCCAATCTCATCTTCAGCTCCATTTGCTAATAACTTCTCATCCGGGAAGCGGGGGAAATCGCGGGGGATGGAGTACAAGCTGCTGAAGAAAGTCGGAGTGGATCTTTTTGGTGACTCTGTTGGTACAAACTTTATGCCCCATATCATTACAGTCAATACTGGTGAGGACATTACAATGAAGGTTATATCTTTTTCCCAACAAGGACCCCGTGCAATATGCATCCTATCTGCTAGTGGTGTAATTTCAAATGTTACACTTCGCCAGCCTGATTCTTCTGGGGGAACCTTAACCTATGAGGGCCGTTTTGAGATACTTTCATTGTCTGGATCATTCATGCCTACTGACAACCAAGGATCAAGAAGCAGGTCGGGTGGGATGAGCGTTTCATTGTCAAGTCCAGATGGTCGTGTTGTAGGTGGTGGAGTTGCTGGTCTCCTTGTAGCTGCCGGTCCTGTGCAGGTGGTGGTGGGAAGCTTTTTGCCAAACAACCAGCAAGATCAGAAACCAAAGAAGCCAAAGTCTGACTATGCACCAGCTAATGTCACTCCTTCCATTACGGTGTCTTCTGCACCACCCCCTACTAATGGTGAAAAGGAGGATGTCATTGGTGGACACCTACTACACAACAACTCAGGCACAACCCTTAACTCAAACCTTACTCCTCCCTCGGCCTTTCGACGCGAAAACTGGGTTAACATGCACTCCTTGACAGACTCGATGAAGTCGGCTACTGACATTAACATATCTCTTCCTGATAGTTGA 1011 0.4006 MEGREGFSSGVTVIGAEAPSAYHMAPRSEAPSQVPPPVPEATAGAIGVSPVSVGLDGTAAKKKRGRPRKYGPDGLNSMALSPMPISSSAPFANNFSSGKRGKSRGMEYKLLKKVGVDLFGDSVGTNFMPHIITVNTGEDITMKVISFSQQGPRAICILSASGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMPTDNQGSRSRSGGMSVSLSSPDGRVVGGGVAGLLVAAGPVQVVVGSFLPNNQQDQKPKKPKSDYAPANVTPSITVSSAPPPTNGEKEDVIGGHLLHNNSGTTLNSNLTPPSAFRRENWVNMHSLTDSMKSATDINISLPDS 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g02043 336 SUPERFAMILY AF0104/ALDC/Ptd012-like 127 246 - -
Gma18g02043 336 ProSiteProfiles PPC domain profile profile. 124 265 IPR005175 -
Gma18g02043 336 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 1 335 - -
Gma18g02043 336 MobiDBLite consensus disorder prediction 262 276 - -
Gma18g02043 336 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 335 IPR039605 GO:0003680
Gma18g02043 336 MobiDBLite consensus disorder prediction 243 283 - -
Gma18g02043 336 Pfam Plants and Prokaryotes Conserved (PCC) domain 129 242 IPR005175 -
Gma18g02043 336 Gene3D - 129 264 - -
Gma18g02043 336 CDD DUF296 129 219 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g02043 Gma-Chr18 53787866 53791608 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g02043 6 273 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 56.436 8.90e-96 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g02043 - - gmx:100777213 595.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g02043 18 53787866 53791608 Gma18g02043 18 53787866 53791608 ECH
Gma18g02043 18 53787866 53791608 Gma09g02460 09 49961270 49964915 GST
Gma18g02043 18 53787866 53791608 Gma01g01473 01 49845868 49853144 PCT
Gma01g01473 01 49845868 49853144 Gma18g02043 18 53787866 53791608 PCT