Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g02021 ATGGTTCAGGTCGTGGCTTCACGATCCATTCAAAGCACCCCTTTGTGCCCTATTTCTGGATTTGCACATGACAAAACCCAAAACTTGTTAAAGCCTTCATCTTTTGCTTCCAAGGTGTTCCCTTTGGTAGAGAACAATAACAAACACTCCAAACTCAACCTCAGAAGCCTTCAGATCAGTGCAAGGAAATCTTCCCCTTCTGAAGTCATCCCCATGTCACCCGAAGATGATCCAAAAGTGATTTACCGAGAAACAACAAGAGAGAAAACGTCGTCGTGTTGTTTGGGGCGCGTGTTGACGAGACTGGCAGAGTCGCCGGCTGAGGATTTGATAGAAAGAAAGACAGAAAAAGGTTTCTTCTTCTTCATATTCGCCACTTCAAATTTCACATTCCTTTGGTGCTTCCTTCGTAGATCCCACTCTCTCTGCTTCTTCGCTTTACCTCACTCTCAGATGGCTGCGAATTTTGGGAATATCTTGTTTACGTCGTCTCAGTCTAGCTCACAGGTTCATGGGGCCACTGATTCTGTCCAGGTTGCAGTGTGTTCTCTTTGTCAAAAGGCCCTATCACCTGATAATGAGATGGCAAGCGATCTTGCTAGCAGTGGTGTGTGCGGTGATTGTAAATTTTTGTTACTTGAAGACTTTGGGAATCATACACTTACCCAAAGCTCACGATGGAGGCTTAGAGGAAGATTCAGGCACAACAGTTCTGAATCCGTTGAGAATAATTTCTCACAGCAGATCCCCCATGTGGTTAATACTGTGAGGCAACATCAGTCAGCTGCTTCTGGGGAGGATGATCAACTTGTAGATGGTGATACCCCTGCTTGGTCGTTGCAATATGCTAGTGCACATACTACCCCTAGTGGGTCTAGAAGGTGGAGGCAGGTTCTCTCTGACACTGACAGTGATGGTTTTGATAATTGGAATTCTCTTTATGGCGAAAATGAATCAAGTGCAAGTTTTAGACAGTACAGGCTTCCCCATGGCGAGACTGATTCTTTCTCCCACAGTGCTTATGGAGGTGACTCAGATATCTCTATGGATACTCATAGTTTTGTAGGCACTAGAGTCTTAAATTTTCCAGATGAGGGAGATGAGTTTGACAGTGACACTGACATAGATCCAATGCATGCTGGTCTCAGCCAATGGATTTCTACTGATGAAGACAATGAAGAGGAGGAAGAGGAAGAAGAAGAAGAGGAGGAGGAGGAGGATAGGGAATGGGAATTAGCTGAGGCTGAGGAAGCTGAAGCCACATCCCACCTTCAAATTTTTTTCACCTCTAGTCCAAGTGAGAGCAGGGATCACATTAATTCTACTGAATCTGGGGGAATGTTTAGCCAGATAATCCGGGAGACCTGGCATGCTTTTGAGGATGTTGATTTACCTCATGGAGCAAACTTTGGGGATTATCTTGATGCTAGAGGTTTTGAAGATCTGCTTGAGCATCTTGCTGAGAATGACAGCTCAAGACGAGGAGCACCTCCTGCTGCTGTGTCTTTTGTGAATAATCTGCCACGTGTAGTCATTGGCAAGGAAAATGAGAAGCACGGGGAACTAGTTTGTGCCATTTGCAAGGATGTCTTGACACCCGGCACTGAAGTCAATCAACTTCCATGCTCTCACCTTTATCACAACAATTGTATTTTGCCGTGGTTGAGTGCACGAAATTCATGCCCTCTTTGTCGGTATGAACTTCCAACTGATGATAAGGATTATGAAGAGGGAAAGCAGAACATTGATAGTAGAAATGTGATCCATGAGAGGCAGAGAATAGATGTAACAGATGATAGTTCTTCTGATGTTTCTGATGGAGATGAGGTGAATGAAGAAACTGGTAGTAGTCAAGGTGGAATACAGCAGAGACTTCTGAGCTCAGGTTCTACCATGAATTCTTCTGCAACAAGAAGTGGTAGAGGAAGATGGTTTTTTCTTGCTGCAGCTCCAATTGTTAGTCTAGTGGGCATTGTTCTTGTCTTGTGGTTAGGTAATAACAACTCTCAGATTGAAGGAAGTAGACATCTGGGCGGTCACTACTTATCCGGGCAAAATCAGCACACCATTCATGCTTATTCCTCTCCAAACCAGAGGGAGGGTAGAAGCAGAGGGTGGTGGTGCCCATTCTAA 2133 0.4468 MVQVVASRSIQSTPLCPISGFAHDKTQNLLKPSSFASKVFPLVENNNKHSKLNLRSLQISARKSSPSEVIPMSPEDDPKVIYRETTREKTSSCCLGRVLTRLAESPAEDLIERKTEKGFFFFIFATSNFTFLWCFLRRSHSLCFFALPHSQMAANFGNILFTSSQSSSQVHGATDSVQVAVCSLCQKALSPDNEMASDLASSGVCGDCKFLLLEDFGNHTLTQSSRWRLRGRFRHNSSESVENNFSQQIPHVVNTVRQHQSAASGEDDQLVDGDTPAWSLQYASAHTTPSGSRRWRQVLSDTDSDGFDNWNSLYGENESSASFRQYRLPHGETDSFSHSAYGGDSDISMDTHSFVGTRVLNFPDEGDEFDSDTDIDPMHAGLSQWISTDEDNEEEEEEEEEEEEEEDREWELAEAEEAEATSHLQIFFTSSPSESRDHINSTESGGMFSQIIRETWHAFEDVDLPHGANFGDYLDARGFEDLLEHLAENDSSRRGAPPAAVSFVNNLPRVVIGKENEKHGELVCAICKDVLTPGTEVNQLPCSHLYHNNCILPWLSARNSCPLCRYELPTDDKDYEEGKQNIDSRNVIHERQRIDVTDDSSSDVSDGDEVNEETGSSQGGIQQRLLSSGSTMNSSATRSGRGRWFFLAAAPIVSLVGIVLVLWLGNNNSQIEGSRHLGGHYLSGQNQHTIHAYSSPNQREGRSRGWWCPF 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g02021 710 MobiDBLite consensus disorder prediction 388 414 - -
Gma18g02021 710 Coils Coil 386 418 - -
Gma18g02021 710 PANTHER OS06G0101300 PROTEIN 376 633 - -
Gma18g02021 710 Pfam Ring finger domain 524 565 IPR001841 -
Gma18g02021 710 MobiDBLite consensus disorder prediction 611 634 - -
Gma18g02021 710 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 484 571 IPR013083 -
Gma18g02021 710 SMART ring_2 524 564 IPR001841 -
Gma18g02021 710 MobiDBLite consensus disorder prediction 386 416 - -
Gma18g02021 710 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 376 633 - -
Gma18g02021 710 SUPERFAMILY RING/U-box 514 571 - -
Gma18g02021 710 MobiDBLite consensus disorder prediction 593 634 - -
Gma18g02021 710 ProSiteProfiles Zinc finger RING-type profile. 524 565 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g02021 Gma-Chr18 53512877 53521818 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g02021 173 710 C3H Transcription Factor Family AT5G01980 42.500 2.79e-117 359
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g02021 - - gmx:100800933 1087.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g02021 18 53512877 53521818 Gma18g02021 18 53512877 53521818 ECH
Gma18g02021 18 53512877 53521818 Gma09g02478 09 50121761 50129144 GST