Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g02019 atggaaggcaacaacaacaacaacaacaacaacGCTGACGTGTTCAGACCTTCTGTGGGGCCCTCCTCCTCGCCGAACTCGAGGAGATACTCGGGGATTTTATCGGCGTCGAACCTCATTCAGGCACCGCTATCGGCGCTGCTGGAATATTCCGGCATCCTTCCGTCACGGTCGTCCAACCAACACAGCCAGCCCAGCTCCGACGCCGCCAACAATGACGGCGAGGTTTCGATTAGGATCATCGGCCCGGCGGAACAGGAGCAGAGGGAGGAACAACAGCTGCAGCAGACCCCTCCTCCCGGATTGGTCGTCGGACTCTCGCATTCCCAGAACGACACCGTTTTGGCATCGGGGTCGCCgcgcggcgacgccgagggcgcggcggggaccgagggcgcCGCCGCTGGAGGGGACGGTGCAGGGAGGGATTCATCTTACCAGAGATATGACATTCAGCATGCCGCCAGGTGGATTGAGCAGGTTTTGCCGTTTTCGTTGCTTCTGTTGGTGGTTTTCATTAGGCAGCATTTGCAAGGGTTTTTTGTGACCATTTGGATTGCTGCTGTGCTTTTCAAGTCCAATGATATTCTAAGGAAACAAACTGCGTTGAAGGGGGAGAGGAAGATGCTGGTTTTGGTTGGGATTTCTGTTGGGTTCGCGCTTCATGTGGTTGGTGTCTACTGGTGGTATCAGAATGATGATCTAATGTATCCATTGATCATGCTTCCTCCCAAGGATATACCGCCTTTCTGGCACGCGATTTTCATCATCATGGTCAATGATACTTTGGTTCGCCAGGCTGCAATGGTATTCAAGTGTATATTGTTGATGTATTACAAGAATAGCAGAGGCCGAAATTATCGTAAGCAGGGTCAAATGCTGACTTTAGTTGAATACCTCCTCCTGCTTTACCGTGCCTTGTTGCCAACACCAGTTTGGTATCGTTTCTTCCTGAACAAAGAATATGGAAGCCTCTTTTCATCACTGATGACAGGATTGTATCTAACATTTAAACTCACGTCTGTTGTTGAAAAGGTGCAATCCTTCTTTGCTGCAGTGAAAGCATTGTCGCGTAAAGAAATGCACTATGGGGCTTATGCAACATCAGAGCAGGTCAATGCAGCTGGTGATCTTTGTGCTATTTGCCAGGAGAAGATGCATGCTCCCATCTTACTACGTTGTAAACATATTTTCTGTGAAGATTGCGTATCAGAGTGGTTTGAGAGAGAAAGGACCTGCCCATTGTGCAGGGCTTTGCTTTACTTTTTCAAAGCAGCAGTCACGATCTATATACATCAACACATGTAA 1308 0.4587 MEGNNNNNNNNADVFRPSVGPSSSPNSRRYSGILSASNLIQAPLSALLEYSGILPSRSSNQHSQPSSDAANNDGEVSIRIIGPAEQEQREEQQLQQTPPPGLVVGLSHSQNDTVLASGSPRGDAEGAAGTEGAAAGGDGAGRDSSYQRYDIQHAARWIEQVLPFSLLLLVVFIRQHLQGFFVTIWIAAVLFKSNDILRKQTALKGERKMLVLVGISVGFALHVVGVYWWYQNDDLMYPLIMLPPKDIPPFWHAIFIIMVNDTLVRQAAMVFKCILLMYYKNSRGRNYRKQGQMLTLVEYLLLLYRALLPTPVWYRFFLNKEYGSLFSSLMTGLYLTFKLTSVVEKVQSFFAAVKALSRKEMHYGAYATSEQVNAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALLYFFKAAVTIYIHQHM 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g02019 435 MobiDBLite consensus disorder prediction 1 30 - -
Gma18g02019 435 SUPERFAMILY RING/U-box 371 423 - -
Gma18g02019 435 MobiDBLite consensus disorder prediction 86 140 - -
Gma18g02019 435 CDD RING-HC_RNFT1_like 378 417 - -
Gma18g02019 435 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 7 420 - -
Gma18g02019 435 MobiDBLite consensus disorder prediction 88 117 - -
Gma18g02019 435 ProSitePatterns Zinc finger RING-type signature. 394 403 IPR017907 -
Gma18g02019 435 Pfam Zinc finger, C3HC4 type (RING finger) 377 418 - -
Gma18g02019 435 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 7 420 IPR044235 GO:0061630|GO:1904294
Gma18g02019 435 ProSiteProfiles Zinc finger RING-type profile. 379 417 IPR001841 -
Gma18g02019 435 SMART ring_2 379 416 IPR001841 -
Gma18g02019 435 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 353 423 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g02019 Gma-Chr18 53500731 53504002 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g02019 17 420 C3H Transcription Factor Family AT5G01960 71.569 0.0 603
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g02019 - K22379 gmx:100818546 758.059
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g02019 18 53500731 53504002 Gma18g02019 18 53500731 53504002 ECH