Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g01996 ATGGCTTCTCTGCTCTCTACAACTGCAACCACACTTCAACATAATCACACAATCTGCTTCTCCCCTGTCAAACCCACCACCCCAAATACCATTCCCTTCTCAACAAACCGTTGTTTCAAGAACAACTCTGCAAAGTGCAATGCTTTTTTTGATAAATTCCCCAAAGACTTGTTGGAGACCACTTTTCATTTGGACCAGTTCCCTGTCTTCCAATCAGTGATAGTGAAGTTTCAGAATGTAACTGAAGACTTATCAGACGTGCAGAGGTGGGGGCTTGGGATCCTAGCAGGGCTGACATGGGCTTATTTCACCGCGAGGCCCGGTGTTCTCGTCGGCGCCATTGATGCATTCCTCTTGGCTCCTATCCAACTGGTTTTGGACAGTTTATCTGGAAGGAGGAATCTGAAGAGGACTGATTTTCTTGTTGGAGATAAGCTTGGAGAAGGGTCATTTGGTGTTGTTTATTCGGGTGTTTTGGTCCCAAGGAATGTGGATGTGCAAGAGTGGATGCAGAAAAGTGGAAGGGACAAGGTGGCTAAGTTGGATGCCAAATCTAAGGATAAAGTCGTTCTTAAAAAGGTAAAGGTTGGAATTGAAGGAGCAGAGGAATTTGGTGATTTTGAAGAGTGGTTCAATTATAGACTCTCTAGAGCAGCTCCTGAAACATGTGCTAAGTTTCTTGGTAGTTTTGTAGCTGATAAAACCAATTCACAGTTCACAAAAGGTGGAAAATGGCTTGTTTGGAAGTTTGAGGGAGGCCGATCTCTTGCTGATTACATGGCTGATCAAAGCTTCCCTTCAAACTTAGAGTCTATCATGTTTGGACGTGTCTTGCAAGGCGTCGACTCTTCTAAACGAAATGCATTGATCATCAAGCAAATAATGCGCCAGATAATTACATCTCTTAAGAAAATTCACGACATAGGCATTGTACACAGGGATGTTAAGCCTGCCAACTTGGTGGTTACCAAACGGGGGCAGATTAAACTCATTGATTTTGGTGCTGCGACAGACCTTCGAATTGGAAAGAATTATGTTCCTAATCGTACCCCTTTGGATCGTGACTACTGTCCCCCTGAGCTATACGTGTTACCAGAAGAAACACTAAGTCTCCCACCAGAGCCTATTGCAGCTTTCCTTTCACCCATCTTGTGGCAGTTAAACAGTCCTGATCTGTTTGATATGTATTCTGCCGGGATTGTACTCCTGCAAATGGCAATACCAACCTTAAGGTCTCCAGCTGCTTTGAAGAATTTCAATTTGGAGATAAGAACATGTGGATATGATTTGAACAAATGGAGGGCATCTACTCGCATGAGGTCTGACTTCCAAATTCTTGATAGTGACTCTAGTAGAGGGTGGGACTTAGCAACAAAGCTTATCTCCAAGAGAGcacaaagtgagctgcttacaaatgctatGGGGAGCTCGTATGATATGGATATGATGGCATCCCATCTAAAGGCCAACTAA 1473 0.4297 MASLLSTTATTLQHNHTICFSPVKPTTPNTIPFSTNRCFKNNSAKCNAFFDKFPKDLLETTFHLDQFPVFQSVIVKFQNVTEDLSDVQRWGLGILAGLTWAYFTARPGVLVGAIDAFLLAPIQLVLDSLSGRRNLKRTDFLVGDKLGEGSFGVVYSGVLVPRNVDVQEWMQKSGRDKVAKLDAKSKDKVVLKKVKVGIEGAEEFGDFEEWFNYRLSRAAPETCAKFLGSFVADKTNSQFTKGGKWLVWKFEGGRSLADYMADQSFPSNLESIMFGRVLQGVDSSKRNALIIKQIMRQIITSLKKIHDIGIVHRDVKPANLVVTKRGQIKLIDFGAATDLRIGKNYVPNRTPLDRDYCPPELYVLPEETLSLPPEPIAAFLSPILWQLNSPDLFDMYSAGIVLLQMAIPTLRSPAALKNFNLEIRTCGYDLNKWRASTRMRSDFQILDSDSSRGWDLATKLISKRAQSELLTNAMGSSYDMDMMASHLKAN 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g01996 490 Pfam Protein kinase domain 290 465 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma18g01996 490 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 2 464 IPR044803 GO:0004674|GO:0009579
Gma18g01996 490 SUPERFAMILY Protein kinase-like (PK-like) 137 418 IPR011009 -
Gma18g01996 490 SMART serkin_6 140 470 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma18g01996 490 Gene3D Phosphorylase Kinase; domain 1 127 250 - -
Gma18g01996 490 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC 2 464 - -
Gma18g01996 490 Gene3D Transferase(Phosphotransferase) domain 1 281 473 - -
Gma18g01996 490 ProSitePatterns Serine/Threonine protein kinases active-site signature. 310 322 IPR008271 GO:0004672|GO:0006468
Gma18g01996 490 ProSiteProfiles Protein kinase domain profile. 140 490 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g01996 Gma-Chr18 53255739 53259211 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g01996 140 339 MAP Kinase Kinase Kinase AT3G13530 25.123 6.98e-11 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-4 Gma18g01996 Pkinase 2.7e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g01996 - - gmx:100795624 891.723
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g01996 18 53255739 53259211 Gma18g01996 18 53255739 53259211 ECH
Gma03g00024 03 305717 308730 Gma18g01996 18 53255739 53259211 PCT