Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g01982 ATGCAGCGGCGGTTTCTGGAGACGGAACTGAGCATGCCACCCTCGTACGGCGGCGGCAACACTAGCGACACGTTCATCAGCGACGCGAACTTTGACACCAACATGGTGATCATTCTGGCGGCGCTGCTGTGCGCTTTGATATGCGCGCTGGGTCTGAACTCCATCGCGCGGTGCGCGCTGCGGTGCGGGCGGCCCTTCGGCAACGAGACGGCGGAGCAGGCGGCAGCGCGGCTGGCGGGGACGGGGCTAAAGCGCCGCGAGCTCAGCCGCATCCCAGTCGCGGTGTACGGCGCCGCCGGCGAAAACACGATTCCGGCGACGGAGTGCCCCATATGCCTCGGCGAGTTCGAGAAAGGTGACAGGGTTCGAATGTTGCCCAAGTGCAACCACGGGTTCCACGTGAGGTGCATTGACACGTGGCTTCTGTCGCATTCCTCGTGCCCCAATTGCCGCCACTCGCTCCTCGAGAAGCCCGCGGCCGCGCCGGAAAGTGGGTCGGGGCGGCGTAGCGAGGTGGTGGTGGTGGTGGAGCAGGCGAGTTGA 543 0.6575 MQRRFLETELSMPPSYGGGNTSDTFISDANFDTNMVIILAALLCALICALGLNSIARCALRCGRPFGNETAEQAAARLAGTGLKRRELSRIPVAVYGAAGENTIPATECPICLGEFEKGDRVRMLPKCNHGFHVRCIDTWLLSHSSCPNCRHSLLEKPAAAPESGSGRRSEVVVVVEQAS 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g01982 180 Pfam Ring finger domain 108 151 IPR001841 -
Gma18g01982 180 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 156 IPR013083 -
Gma18g01982 180 CDD RING-H2_EL5_like 108 151 - -
Gma18g01982 180 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 164 - -
Gma18g01982 180 SUPERFAMILY RING/U-box 103 158 - -
Gma18g01982 180 ProSiteProfiles Zinc finger RING-type profile. 109 151 IPR001841 -
Gma18g01982 180 PANTHER RING-H2 FINGER PROTEIN ATL74 1 164 - -
Gma18g01982 180 SMART ring_2 109 150 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g01982 Gma-Chr18 53104241 53105467 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g01982 1 176 C3H Transcription Factor Family AT3G10910 54.497 5.58e-57 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g01982 K19040 - gmx:100810195 326.635