Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g01971 ATGAGTTCGGATGAGTCCTTGCTTTTGGAATCGTCGGATTCTCGTCCAGTGATTCATCACCGCCGCGGGAAATCGGGTTCCCGGAGCTACCTCTCCGGCAATGGTTCCTTCTCATCTTCGGCCTTTGATGATGCTTTCGCTGAGAGCATCGTTTTGGATGTGAAGGAACGAGACGGTGGCGACGTTGTGTTGTCCAGAGATTGTAGTCTCCACACTGCAGCGTTTGGGAATAATAGTGGTTCTGAGAGTTGTGTTGAGGCCCAGTTCCCGTGGCAGTTTCCCTTGGAATGCCCCCCGCGCGAGAGGAGGAGCTTGGCATCGTGGGGTGCAATGGAACTGGGTGATGCCGATAGCCGGAGTGTGCCATTTGAGATATCTGGAGCTTCATCCCAGGTGCAGGACAGCAGGTTGAATAGTAAATCACAGAGAATTCGGCACAAAAGTGTGCAATTTGATGATGCTGCCTTACATGAGGACAGTGCCAGGTTGATCCATATCAATGATCCGAGGAGGACGAATGGTAAGTATGAGTTCACTGGAAATGAGATCCGGACTAGCAGATACACCTTTGTTACCTTTTTGCCCAAGAATCTGTTCATTCAGTTTCATCGGGTGGCTTATCTGTATTTCCTTGCTATTGCTGCGCTCAATCAGCTTCCTCCACTGGCTGTGTTTGGGAGGACAGTGTCTCTTTTCCCGCTTTTGTTTGTGCTTTGTGTCACAGCTATTAAGGATGGCTATGAGGATTGGCGGAGGCACAGGTCAGATCGCAATGAGAACAACCGGGAGTCTCTGGTGCTTCAGTCTGGTGATTTCCGATCAAAGAAATGGAAAAAAATACAAGCTGGTGAGGTTGTTAAGATCTTTGCGGATGAGACCATTCCGGCTGACATGGTCTTGTTGGGGACGAGTGATCAAAGTGGGCTTGCCTATATTCAGACAATGAATTTGGATGGAGAATCAAATTTGAAGACAAGGTATGCTAGGCAGGAAACAGCTATGGTAGTTGCATCCGAAGCTTGTGATGTTTTTGGTGTAATTAGATGTGAGCAACCCAACCGGAATATTTATGAGTTCACGGCCAACATGGAGTTCAATGGACTAAAGTTTTCCCTTAGCCAGTCAAACATTGTTCTGCGTGGCTGCCAACTGAAGAACACAGATTGGATAATTGGTGTTGTAGTTTATGCAGGACAAGAAACAAAAGCAATGTTGAACAGTGCAGCTTCTCCTTCCAAGAGAAGCAGACTAGAAACTTACATGAACCGAGAAACCCTTTGGTTGTCAATTTTTCTTTTTATCATGTGTTTGGTTGTGGCTGTTGGGATGGGTCTTTGGCTGGTACGGCACAAGAACCAGCTTGATACCTTGCCTTACTACAGAAAAAGATACTTCACCAATGGATCAGATAATGGAAAGAAATATAAGTATTATGGGATACCAATGGAAGCATTTTTCTCCTTTTTGAGTTCTGTTATAGTGTTTCAGATAATGATACCAATATCTCTTTACATCACAATGGAGTTAGTTCGATTGGGTCAGTCATATTTCATGATTGAAGACAGGGATATGTATGATGCCAGCTCTGGGTCAAGGTTTCAGTGTAGATCATTAAATATAAATGAGGATTTGGGTCAAATACGCTATGTATTTTCAGACAAGACAGGAACACTAACAGAAAACAAAATGGAATTCCAGAGGGCTAGTGTGCATGGGAAGAATTACGGGAGCTCCTTGCCTATGGTTGATAATACAGCAGCGGAAGATGTTATTCCTAAACGGAAATGGAAGCTCAAATCTGAAATTGCAGTTGATTCTGAACTGATGACATTGTTGCAGAAAGACTCAAATAGAGAAGAAAAAATTGCTGCAAATGAGTTTTTTCTTACATTGGCTGCTTGTAACACTGTAATCCCTATACTTAGTGATGATGGATTTTCCAGTCTTGGAACTAATGAATTAAATGAAGATACTAGACGCATTGATTACCAGGGAGAATCTCCTGATGAACAAGCTCTAGTTTCTGCAGCCTCTGCATATGGATATACTCTTTTTGAACGCACATCTGGACATATTGTTATTGACGTCAACGGTGAGAAACTCAGATTGGACGTATTGGGTCTGCATGAGTTTGATAGTGTGCGAAAAAGAATGTCTGTTGTTATTCGGTTTCCTGACAACGCGGTAAAGGTGTTAGTCAAAGGTGCTGATACTTCAATGTTTAGCATTTTGGAAAATGGCAGTGAGAGTAACATATGGCATGCAACTGAAAGCCATTTGAATGAATATTCTTCACAAGGTTTGCGCACTCTTGTAGTTGCCTCCAGGGATCTTTCTGATGCTGAACTTGAGGAGTGGCAAAGCAAGTATGAAGAGGCAAGCACTTCATTGACTGACAGAGCTACTAAACTACGGCAAACAGCAGCTCTTATAGAAAGCAATTTAAAGTTACTTGGAGCAACTGGAATTGAGGACAAGCTACAAGAGGGTGTACCAGAAGCAATTGAGGCTCTACGGCAAGCTGGAATCAAGGTCTGGGTTCTTACTGGTGATAAGCAAGAGACGGCAATTTCAATTGGTCTTTCTTGCAAACTTCTTAGTGGAGACATGCAGCAGATTACTATAAATGGCACTTCAGAGGTCGAATGTAGAAATCTTTTGGCCGATGCTAAAGCCAAATATGGCGTGAAACCATCAAGTGGAGGGCATCGGAATCTGAAGCACAAAACCAATGCTGGACATGGTGATCTGGATATTCCCAATGGTTCAAAGTCTTTGAGCTTTCCCAAATGGAATCCTGGAAATGAAGAAGGAACTAATGCTCCATTGGCACTCATAATTGATGGAAACAGTTTGGTTTATATTTTGGAGAAGGAACTGGAGTCAGAGCTTTTCGACCTTGCAACTTCCTGTAGGGTTGTGCTGTGTTGTCGAGTTGCACCCTTGCAAAAGGCAGGAATTGTTGATTTGATAAAGAGCCGCACAGATGATATGACACTGGCCATAGGTGATGGGGCCAATGACGTGTCAATGATCCAAATGGCAGATGTTGGTGTAGGGATATGTGGGCAGGAAGGGCGCCAAGCAGTGATGGCATCAGATTTTGCTATGGGACAGTTTCAGTTCTTGAAAAAATTACTTCTGGTTCATGGGCACTGGAATTATCAGCGTGTTGGTTATTTAGTTCTGTACAACTTCTACCGCAATGCTGTCTTTGTAATGATGTTGTTTTGGTACATATTATGCACGGCTTTTTCTACAACTTCTGCTTTGACAGATTGGAGTAGTGTTTTCTATTCTGTGATATACACATCTATACCTACTATTATTGTTGGTATTCAGGACAAGGACTTGAGTCATAGGACACTATTGCAGTATCCAAAACTGTATGGTTCAGGTCATAGGCAAGAAGCTTATAATATGCAATTATTTTGGATCACAATGATGGACACAGTATGGCAGAGCCTTGTTCTTTTCTACATCCCATTGTTCACCTATAAGGACAGTTCAATTGATATATGGAGCATGGGCAGTTTGTGGACAATTGCAGTTGTTATCCTTGTAAATGTACACCTTGCTATGGACATCAACCGTTGGGTATTAATTACTCATGTTGCTATCTGGGGATCAATAATCATTACATATGGTTGCATGGTGGTATTGGATTCTATACCTGTCTTTCCCAATTACTGGACTATTTATCATCTGGCAAGGTCCCCTACATATTGGATAACAATTTTGCTTATAATTATTGTGGCATTGCTCCCACGCTTTACTTGCAAAGTTGTTTATCAAATTTTTTGGCCTTCGGATATTCAGATAGCCAGAGAAGCTAAGTTAATGAGAAAATGGCAAGATAATTTGCAGCCAAGGCAACAAGTTTCCAGTTAA 3891 0.4243 MSSDESLLLESSDSRPVIHHRRGKSGSRSYLSGNGSFSSSAFDDAFAESIVLDVKERDGGDVVLSRDCSLHTAAFGNNSGSESCVEAQFPWQFPLECPPRERRSLASWGAMELGDADSRSVPFEISGASSQVQDSRLNSKSQRIRHKSVQFDDAALHEDSARLIHINDPRRTNGKYEFTGNEIRTSRYTFVTFLPKNLFIQFHRVAYLYFLAIAALNQLPPLAVFGRTVSLFPLLFVLCVTAIKDGYEDWRRHRSDRNENNRESLVLQSGDFRSKKWKKIQAGEVVKIFADETIPADMVLLGTSDQSGLAYIQTMNLDGESNLKTRYARQETAMVVASEACDVFGVIRCEQPNRNIYEFTANMEFNGLKFSLSQSNIVLRGCQLKNTDWIIGVVVYAGQETKAMLNSAASPSKRSRLETYMNRETLWLSIFLFIMCLVVAVGMGLWLVRHKNQLDTLPYYRKRYFTNGSDNGKKYKYYGIPMEAFFSFLSSVIVFQIMIPISLYITMELVRLGQSYFMIEDRDMYDASSGSRFQCRSLNINEDLGQIRYVFSDKTGTLTENKMEFQRASVHGKNYGSSLPMVDNTAAEDVIPKRKWKLKSEIAVDSELMTLLQKDSNREEKIAANEFFLTLAACNTVIPILSDDGFSSLGTNELNEDTRRIDYQGESPDEQALVSAASAYGYTLFERTSGHIVIDVNGEKLRLDVLGLHEFDSVRKRMSVVIRFPDNAVKVLVKGADTSMFSILENGSESNIWHATESHLNEYSSQGLRTLVVASRDLSDAELEEWQSKYEEASTSLTDRATKLRQTAALIESNLKLLGATGIEDKLQEGVPEAIEALRQAGIKVWVLTGDKQETAISIGLSCKLLSGDMQQITINGTSEVECRNLLADAKAKYGVKPSSGGHRNLKHKTNAGHGDLDIPNGSKSLSFPKWNPGNEEGTNAPLALIIDGNSLVYILEKELESELFDLATSCRVVLCCRVAPLQKAGIVDLIKSRTDDMTLAIGDGANDVSMIQMADVGVGICGQEGRQAVMASDFAMGQFQFLKKLLLVHGHWNYQRVGYLVLYNFYRNAVFVMMLFWYILCTAFSTTSALTDWSSVFYSVIYTSIPTIIVGIQDKDLSHRTLLQYPKLYGSGHRQEAYNMQLFWITMMDTVWQSLVLFYIPLFTYKDSSIDIWSMGSLWTIAVVILVNVHLAMDINRWVLITHVAIWGSIIITYGCMVVLDSIPVFPNYWTIYHLARSPTYWITILLIIIVALLPRFTCKVVYQIFWPSDIQIAREAKLMRKWQDNLQPRQQVSS 1296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g01971 1296 Gene3D - 814 1042 IPR023214 -
Gma18g01971 1296 Pfam Phospholipid-translocating P-type ATPase C-terminal 1030 1270 IPR032630 -
Gma18g01971 1296 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 557 831 IPR023299 GO:0000166
Gma18g01971 1296 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 178 1277 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Gma18g01971 1296 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 155 1294 - -
Gma18g01971 1296 SUPERFAMILY Calcium ATPase, transduction domain A 261 403 IPR008250 -
Gma18g01971 1296 Pfam Phospholipid-translocating ATPase N-terminal 164 229 IPR032631 -
Gma18g01971 1296 SUPERFAMILY HAD-like 538 1046 IPR036412 -
Gma18g01971 1296 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 808 866 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gma18g01971 1296 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 972 1088 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gma18g01971 1296 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 484 574 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gma18g01971 1296 Gene3D - 661 797 IPR023299 GO:0000166
Gma18g01971 1296 ProSitePatterns E1-E2 ATPases phosphorylation site. 553 559 IPR018303 -
Gma18g01971 1296 Pfam Cation transport ATPase (P-type) 653 741 - -
Gma18g01971 1296 SFLD p-type atpase 535 1053 IPR044492 -
Gma18g01971 1296 PRINTS P-type cation-transporting ATPase superfamily signature 551 565 - -
Gma18g01971 1296 PRINTS P-type cation-transporting ATPase superfamily signature 1002 1021 - -
Gma18g01971 1296 Gene3D - 237 407 - -
Gma18g01971 1296 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 155 1294 - -
Gma18g01971 1296 SUPERFAMILY Calcium ATPase, transmembrane domain M 178 1269 IPR023298 -
Gma18g01971 1296 CDD P-type_ATPase_APLT_Dnf-like 180 1162 - -
Gma18g01971 1296 SFLD C1.7: P-type atpase like 535 1053 - -
Gma18g01971 1296 Pfam E1-E2 ATPase 262 509 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g01971 Gma-Chr18 52983564 52989213 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g01971 141 1290 Primary Pumps ATPases AT5G04930 56.995 0.0 1340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g01971 K14802 - gmx:100789830 2533.44