Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g01946 ATGGCAGATCCTGCTAGTTATGGGAGTCTTGAGCGTGATATTGAACAAGCACTCATTGCCATAAAAAAAGGGACTCAGTTAATAAAATACAGTCGAAAAACCAAGCCAAAAGTTTGCCCATTCAGACTTTCTCTGGATGAAACAACACTAATTTGGATTTCTCACAAGAAGGAAAGGAATTTGAAATTATCTTCAGTTTCACGTATTATACCTGGACAAAGAACTGTTGTCTTTCGAAGATATTTACAGCCAGAAAAAGATTATCTATCATTTTCACTTGTTTATAATAACGGGGAGCGAACACTTGATTTGATATGCAAGGACCAAGATGAGGCAGAGGTATGGTTTACAGGCCTTAAGACATTAATTTCTACTGGAAAGCTTAGGCGCATTGGAAGTGAATTATTTAATGATGGTGCTGATTTTATTCCAAACGGTGGTCCTTTTGGTGCAGCACTAGAATTTGCTATAAGCATTTCTCATAACAAGAAGGTCTCTTTTGATTTTGCTTCTCGTGAGCCTTCATTGAATTTGGCAACCACAGATGTGGGGTTAGAGCGACGTGCTAATAATATGCAACCAAGAACAAGCATTGGAGATGGTTTTCGTGTCAGCGTGTCGAGTACACCGAGTGTTTTGAGTACAGGGTCAGGACCAGATGACATAGAATCACTTGGTGATGTTTATATATGGGGAGAGGTTTGGGCAAGTGGGGTTTCACCTGATGGATTTTCCACACAAGCCCCTTCCACAACAGATGTGTTGATTCCTAAGCCATTGGAGTCAAGTGTTGTTCTTGATGTTCAACAGATTGCATCTGGTGTGAGGCACATTGCTTTGGTAACAAGGCAAGGGGAGGTTTTTACTTGGGGAGAAGAATGTGGGGGAAGACTTGGCCATGGAATTGATAGAGATTTCGGTCGCCCTCAACTTGTTGAGTTTTTGGCAGTTACTAGTATGGATTTTGTTGCATGTGGAGAGAATCATACATGTGCTGTTTCTACATATGATGATATTTTCTCATGGGGTGATGGTACATACAATGTTGGACTTCTTGGTCATGGAACTGATGTTAGCCATTGGATACCAAAAAGAATTAGTACCGGTCCTTTAGAAGGGCTTCAAGTTATATCCATTGCATGTGGCACATGGCATTCAGCACTAGCAACTTCTAATGGAAAACTTTTTACCTTCGGTGATGGAACATTTGGAGTTTTAGGCCATGGAAACAGAGAAAGTATTCCATATCCAAAGGAGGTGAAATTTTTAAATGGATCGAAAACCATTAAGGTTGCATGTGGAGTGTGGCACACGGCAGCCATTGTAGAGGTTACTTTTCAATCCAATTCAAACGTTTCATCCAGGAAGCTTTTCACTTGGGGAGATGGCGACAAATATCGTTTAGGACATGGGAACAAGGGAACATACCTTCAACCAACTTGTGTCTCTGCACTTATTAAATATAATTTCCACCAGATAGCATGTGGACACACCATGACTGTTGCCCTCACTACATCTGGTCACGTCTTTACTATGGGAAGCAATGAAAATGGTCAACTAGGAAACCGTTTGGCTGATGAAAAAGTACCTATCCTAGTGCAAGACAAGTTGGTGGGTGAATTTGTTGAGGAAATAGCATGTGGTTCTCATCATGTTGCTGCCTTGACATCAAGAAGTGAACTATATACATGGGGGAAAGGTGCCAATGGGAGATTGGGACATGGAGACATAGAGGATAGAAAATCCCCAACATTAGTAGAATCCTTAAGAGATAGGCATGTAAAGAATATCTCTTGTGGCTCAAACTTTACATCTTGCATATGCATTCATAAATGGGTCTCTGGAGTTGACCAATCTGTTTGCACTGGTTGTAGACAACCATTTGGTTTCACTAGAAAGAGGCATAATTGCTACAATTGTGGATTAGTGCATTGCCATGGTTGTAGTTCAAAAAAGGTATTGAAAGCATCATTGGCTCCAACACCGGGAAAACCTCATCGCGTGTGTGACTCTTGTTATAATAAGCTTAAAGCTGTTGAGGCATGTGCTAGTTCTAATCTTCATAGGAAAATGACCACAACACCTCGCTATTCCATAGATGGTAGGGAAAGATTTGGTCAAGGAGAAGTAAAGTCTTCAAGACTTATTTTGCCTCCTATCACAGAACCAATGAAATTTCATCAGATAATGGCTAATAAGATGGGAAACAAACATGATTATTCTTCCATGTCTCCAACTTCCCAAGTTCCATCACTTTTGCAATTGAATGATATTGCATTTGGTAACTCAATAAGTTCAACTCAAAATGTTTTGAAGTCTGCTATAGCTCCTAGTCCAACACCAACTCCACCTGTCAACCAAAGACCAGCATCTCCTTATTCAAGAAGGGCAAGCCCTCCACGTTCTAGAGCTTCAGGATTTTCTAGAAGTCTTGTTGATAGTTTGAGGAAGACAAATGAACTTTTGAATCAAGAAGTTTCAAAAATGCAAAATCAGATTCGAAGTTCGAAGCTAAGAAATGACATGGAAATTCAAAAGCTCCAAAAAACTATCACCGAAGCTACCTCCTTTGCTGTAGAGGAATCCTCTAAGCATAAAGCCATGAAAGAATTTTTTGAGTCTACGGTGGATCAGATGAAGGAAATGATTGAGAAGTTGCCTCCAGATGTTTTAGATAGTGAAAATTGGAAAATCATGCTTACTCGAGCTGAGGATTTTCTAAAAGAAAAATCAGAATTTGAAACACCATCAAATGTGAAGTCTCAACAACAACATGAACTTAATACACCTAACTCATATAGTAGCTCTTCTAAATTGCAAGAACATGGAATAGAAGAAAATAATGAAACGGTAGGAGTTGACCCATCATCACAAGATGAAGGAAACGTTCAAGTAAGCAATAGCTCATCTTTATCAAACAATGAAGCATCAATGCCTTCACAAAATGATTCAAAATCACAACACTCTTCAAGGCCAGGCAAAGAAGGAGAAATGCAGGTCATGGAACAATTTGAACCTGGGGTACATGTGACTCTAATAGTAAAGCCTGGTGGTGTCAGAATTTTCAAACGAGTCAAATTCAGTAAACGAAGGTTCCATGAACATCAAGCAGAAGAATGGTGGAGCAAAAATAAAGATAGAGTGCTTAGGAAATATAGTACTCCACAGGCTACAAATTTTGAAGGTATTAGGTCATCTAACACTCTACCACCACCACCTACAGAAGAAAATATTGAGGCAATGTCTTCCTAA 3252 0.3958 MADPASYGSLERDIEQALIAIKKGTQLIKYSRKTKPKVCPFRLSLDETTLIWISHKKERNLKLSSVSRIIPGQRTVVFRRYLQPEKDYLSFSLVYNNGERTLDLICKDQDEAEVWFTGLKTLISTGKLRRIGSELFNDGADFIPNGGPFGAALEFAISISHNKKVSFDFASREPSLNLATTDVGLERRANNMQPRTSIGDGFRVSVSSTPSVLSTGSGPDDIESLGDVYIWGEVWASGVSPDGFSTQAPSTTDVLIPKPLESSVVLDVQQIASGVRHIALVTRQGEVFTWGEECGGRLGHGIDRDFGRPQLVEFLAVTSMDFVACGENHTCAVSTYDDIFSWGDGTYNVGLLGHGTDVSHWIPKRISTGPLEGLQVISIACGTWHSALATSNGKLFTFGDGTFGVLGHGNRESIPYPKEVKFLNGSKTIKVACGVWHTAAIVEVTFQSNSNVSSRKLFTWGDGDKYRLGHGNKGTYLQPTCVSALIKYNFHQIACGHTMTVALTTSGHVFTMGSNENGQLGNRLADEKVPILVQDKLVGEFVEEIACGSHHVAALTSRSELYTWGKGANGRLGHGDIEDRKSPTLVESLRDRHVKNISCGSNFTSCICIHKWVSGVDQSVCTGCRQPFGFTRKRHNCYNCGLVHCHGCSSKKVLKASLAPTPGKPHRVCDSCYNKLKAVEACASSNLHRKMTTTPRYSIDGRERFGQGEVKSSRLILPPITEPMKFHQIMANKMGNKHDYSSMSPTSQVPSLLQLNDIAFGNSISSTQNVLKSAIAPSPTPTPPVNQRPASPYSRRASPPRSRASGFSRSLVDSLRKTNELLNQEVSKMQNQIRSSKLRNDMEIQKLQKTITEATSFAVEESSKHKAMKEFFESTVDQMKEMIEKLPPDVLDSENWKIMLTRAEDFLKEKSEFETPSNVKSQQQHELNTPNSYSSSSKLQEHGIEENNETVGVDPSSQDEGNVQVSNSSSLSNNEASMPSQNDSKSQHSSRPGKEGEMQVMEQFEPGVHVTLIVKPGGVRIFKRVKFSKRRFHEHQAEEWWSKNKDRVLRKYSTPQATNFEGIRSSNTLPPPPTEENIEAMSS 1083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g01946 1083 Pfam Regulator of chromosome condensation (RCC1) repeat 285 333 IPR000408 -
Gma18g01946 1083 Pfam Regulator of chromosome condensation (RCC1) repeat 392 441 IPR000408 -
Gma18g01946 1083 Pfam Regulator of chromosome condensation (RCC1) repeat 457 503 IPR000408 -
Gma18g01946 1083 Pfam Regulator of chromosome condensation (RCC1) repeat 560 607 IPR000408 -
Gma18g01946 1083 Pfam Regulator of chromosome condensation (RCC1) repeat 506 555 IPR000408 -
Gma18g01946 1083 Pfam Regulator of chromosome condensation (RCC1) repeat 338 388 IPR000408 -
Gma18g01946 1083 ProSiteProfiles PH domain profile. 91 124 IPR001849 -
Gma18g01946 1083 PANTHER CHROMOSOME CONDENSATION REGULATOR RCC1 REPEAT PROTEIN 13 1060 - -
Gma18g01946 1083 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 271 281 IPR000408 -
Gma18g01946 1083 MobiDBLite consensus disorder prediction 1055 1083 - -
Gma18g01946 1083 CDD PH_PLC_plant-like 12 124 - -
Gma18g01946 1083 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 13 1060 - -
Gma18g01946 1083 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 285 336 IPR000408 -
Gma18g01946 1083 MobiDBLite consensus disorder prediction 911 997 - -
Gma18g01946 1083 Pfam Pleckstrin homology domain 16 123 IPR001849 -
Gma18g01946 1083 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 393 444 IPR000408 -
Gma18g01946 1083 CDD FYVE_like_SF 621 673 - -
Gma18g01946 1083 Pfam Transcription factor BRX N-terminal domain 860 895 IPR027988 -
Gma18g01946 1083 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 507 558 IPR000408 -
Gma18g01946 1083 SUPERFAMILY PH domain-like 14 123 - -
Gma18g01946 1083 Coils Coil 812 839 - -
Gma18g01946 1083 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 615 677 IPR017455 -
Gma18g01946 1083 MobiDBLite consensus disorder prediction 916 941 - -
Gma18g01946 1083 Pfam Transcription factor regulating root and shoot growth via Pin3 998 1052 IPR013591 -
Gma18g01946 1083 Gene3D - 451 622 IPR009091 -
Gma18g01946 1083 Gene3D - 12 129 IPR011993 -
Gma18g01946 1083 SMART fyve_4 609 678 IPR000306 GO:0046872
Gma18g01946 1083 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 559 610 IPR000408 -
Gma18g01946 1083 Gene3D - 205 450 IPR009091 -
Gma18g01946 1083 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 337 392 IPR000408 -
Gma18g01946 1083 Pfam FYVE zinc finger 611 677 IPR000306 GO:0046872
Gma18g01946 1083 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 431 441 IPR000408 -
Gma18g01946 1083 ProSiteProfiles BRX domain profile. 998 1053 IPR013591 -
Gma18g01946 1083 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 455 506 IPR000408 -
Gma18g01946 1083 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 623 683 IPR013083 -
Gma18g01946 1083 PRINTS Chromosome condensation regulator RCC1 signature 211 227 IPR000408 -
Gma18g01946 1083 PRINTS Chromosome condensation regulator RCC1 signature 337 353 IPR000408 -
Gma18g01946 1083 PRINTS Chromosome condensation regulator RCC1 signature 379 395 IPR000408 -
Gma18g01946 1083 PRINTS Chromosome condensation regulator RCC1 signature 395 409 IPR000408 -
Gma18g01946 1083 PRINTS Chromosome condensation regulator RCC1 signature 496 514 IPR000408 -
Gma18g01946 1083 PRINTS Chromosome condensation regulator RCC1 signature 554 575 IPR000408 -
Gma18g01946 1083 SUPERFAMILY FYVE/PHD zinc finger 611 687 IPR011011 -
Gma18g01946 1083 MobiDBLite consensus disorder prediction 950 987 - -
Gma18g01946 1083 MobiDBLite consensus disorder prediction 774 810 - -
Gma18g01946 1083 SUPERFAMILY RCC1/BLIP-II 226 612 IPR009091 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g01946 Gma-Chr18 52607251 52614506 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g01946 995 1053 Major Intrinsic Protein MIP AT1G31880 38.983 4.75e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g01946 - - gmx:100779684 2128.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g01946 18 52607251 52614506 Gma09g02541 09 50707081 50712699 GST