Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g01927 ATGGGAGATCATAGTAACTGGGAAACTTCTGAACTTAGTCATAATAATCATCATCAAAATCATCAAGTTGGACTTGATGTTCTTAAATTCAAGTCTGTTCAACCTCCCTCACTACCCCTCTCTCCCTCTCCAATCTCCCCTTCTTCTTACTTGAACTTTTCATCTGCTTTCAGCCCTTCTGAGTTGTTGAACTCACCTTTGTTTTTTCCTTCTCCAAATATTTTTGCTTCTCCTACTACTGAGGCCTTGGTTGGCCAGAGCTTCAACTGGAGGAACGGTTCAGGTGAAGAACAACAGCGTGGCAAGGAGGATGAGAAAAACTACTCTGACTTCTCTTTCCAAACCCAAATTCAATCTTCCTTAAACATGTTTCAAGTGCAGGAACCGCTTAAGAAACAAGACATGTGGAAATTCAATGAACCTACAAAGCAGTCTGATTTTTCATCTGAGAGGACAGCAACAAAATCTGAATACCCTTCAATTCAGAAATTTTCCTCAGAAATGGCTGCCGGAAAACCAGAAATACAAAGTAATTCAGTTCCAGGGTCTGGTTATTTTGACTATACAAGTGCATCTCTGTCTGTTAGAGAACAAAAGAGAGCAGAAGATGGGTTCAACTGGAGAAAATATGGACAGAAACAAGTGAAAGGGAGTGAAAATCCTCGTAGTTATTACAAGTGCACACATCCAAATTGCTCAGTGAAGAAGAAAGTGGAGAAGACTTTGGAAGGACAAATCACTGAAATAGTATATAAGGGCCAACATAACCACCCTAAACTGCAGTCTACTAGAAGAACAAACTCTCAATCAATTAATCAACCTTCTTCATCGTGCACAAATTCAGGGATATCTGATCAATCAGTGGTGACCCTAGGAAATCCACAAATGGATCATTTCTCCATACAAGAAGATTCTTCAGCTTCTGTTGGAGAGGAAAATTTTGAGCAAACATCGCAAACCAGTTATTCTGGAGGAGATGAAGATAACCTTGGACCAGATGCCAAAAGATGGAAGGAAGATAACAAAAACGATGGCTATTCTGTCTCAGGGAGTAGAACGGTTAGAGAGCCTAGAGTTGTAGTTCAAACCACAAGCGAAATTGATATACTTGATGATGGCTTTAGGTGGAGGAAATATGGACAGAAAGTAGTCAAAGGAAACCCAAATGCAAGGAGCTATTACAAATGCACGGCCCCTGGTTGCTCAGTGAGAAAACACGTTGAGCGAGCTGCACATGACATCAAAGCTGTGATCACAACTTATGAAGGGAAACACAACCATGATGTACCTGCTGCACGTGGTAGCGGAAACTATTACATGAACAGAAATTCTCTGAACAGCAGCATACCAGCACCTATAAGACCCTCGGCAGTGAATTGTTATTCTAACTCATCAAGTTTCACAAACTCTCTCTATAATAATACTAGACATCCAGCAACTGGAAATCAAGAATCATGTTCACTGGACAAGTTCAAGAACCCTGGAAGTTTTGGCTATTCAGCTCTTAACAGATCAATGAGTTCACATACCGATCATGCGCAATACACAGATGCTGCACACTCAAAGGCCAAGGATGAAAGGAAGGATGACTCATTCCTTCAGTCATTTCTCTCAAAGGACTACTGA 1626 0.409 MGDHSNWETSELSHNNHHQNHQVGLDVLKFKSVQPPSLPLSPSPISPSSYLNFSSAFSPSELLNSPLFFPSPNIFASPTTEALVGQSFNWRNGSGEEQQRGKEDEKNYSDFSFQTQIQSSLNMFQVQEPLKKQDMWKFNEPTKQSDFSSERTATKSEYPSIQKFSSEMAAGKPEIQSNSVPGSGYFDYTSASLSVREQKRAEDGFNWRKYGQKQVKGSENPRSYYKCTHPNCSVKKKVEKTLEGQITEIVYKGQHNHPKLQSTRRTNSQSINQPSSSCTNSGISDQSVVTLGNPQMDHFSIQEDSSASVGEENFEQTSQTSYSGGDEDNLGPDAKRWKEDNKNDGYSVSGSRTVREPRVVVQTTSEIDILDDGFRWRKYGQKVVKGNPNARSYYKCTAPGCSVRKHVERAAHDIKAVITTYEGKHNHDVPAARGSGNYYMNRNSLNSSIPAPIRPSAVNCYSNSSSFTNSLYNNTRHPATGNQESCSLDKFKNPGSFGYSALNRSMSSHTDHAQYTDAAHSKAKDERKDDSFLQSFLSKDY 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g01927 541 SMART WRKY_cls 201 259 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gma18g01927 541 SMART WRKY_cls 370 429 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gma18g01927 541 MobiDBLite consensus disorder prediction 329 345 - -
Gma18g01927 541 MobiDBLite consensus disorder prediction 1 15 - -
Gma18g01927 541 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 17 539 - -
Gma18g01927 541 Pfam WRKY DNA -binding domain 202 258 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gma18g01927 541 Pfam WRKY DNA -binding domain 371 427 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gma18g01927 541 MobiDBLite consensus disorder prediction 1 28 - -
Gma18g01927 541 Gene3D WRKY domain 357 423 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gma18g01927 541 SUPERFAMILY WRKY DNA-binding domain 197 259 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gma18g01927 541 MobiDBLite consensus disorder prediction 256 290 - -
Gma18g01927 541 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 17 539 IPR044810 GO:0003700
Gma18g01927 541 MobiDBLite consensus disorder prediction 303 351 - -
Gma18g01927 541 ProSiteProfiles WRKY domain profile. 365 430 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gma18g01927 541 MobiDBLite consensus disorder prediction 303 326 - -
Gma18g01927 541 MobiDBLite consensus disorder prediction 252 290 - -
Gma18g01927 541 SUPERFAMILY WRKY DNA-binding domain 362 430 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gma18g01927 541 Gene3D WRKY domain 189 259 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gma18g01927 541 ProSiteProfiles WRKY domain profile. 196 260 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g01927 Gma-Chr18 52325322 52329068 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g01927 25 537 WRKY Transcription Factor Family AT2G38470 45.607 1.85e-111 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gma18g01927 WRKY 1.1e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g01927 K13424 - gmx:100792833 1085.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g01927 18 52325322 52329068 Gma18g01927 18 52325322 52329068 ECH
Gma18g01927 18 52325322 52329068 Gma09g02558 09 50881369 50883871 GST
Gma18g01927 18 52325322 52329068 Gma01g01313 01 46176962 46179947 PCT
Gma01g01313 01 46176962 46179947 Gma18g01927 18 52325322 52329068 PCT