Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g01887 ATGGAGTGCATCAGTAACCCTACCCCTTGTGAAGGGTCATCATCATCTTCCAAGCACTCCAACAAGAGCAATAAGGAGAAAAAGGGTGTGAGGAAAAGCAACAAAGGTGGAGGAGGAGGAGGAGTGAGGCTTTCCACTGATCCACAAAGCGTGGCAGCAAGGGAAAGAAGGCACAGAATCAGTGACAGGTTCAAGATCCTTCAGAGCATGGTCCCTGGTGGGAGCAAGATGGACACGGTTTCCATGTTGGAGGGTGCCATTCACTACGTCAAATTCCTCAAGACACAGATTTTGCTCCACCAAGCGTTGATAGACTTTGTAGATGTTGATCATCATGAGTCTCCACTGTTCCTCCCCTCAGAGTATAATAATTTCCCTGATGAACACTCCATTTCCCTTCAACAAAACCCTTCTTCATCAGTTTCGGTGCATTCTCATCATAATCAGCAGAGTTTACCACAGTTACCACTGGCACAGTGCTACTTCCAAGGTGAAGAAGATTTCAACACCTTTGATGCCATGCCACTATGA 531 0.4652 MECISNPTPCEGSSSSSKHSNKSNKEKKGVRKSNKGGGGGGVRLSTDPQSVAARERRHRISDRFKILQSMVPGGSKMDTVSMLEGAIHYVKFLKTQILLHQALIDFVDVDHHESPLFLPSEYNNFPDEHSISLQQNPSSSVSVHSHHNQQSLPQLPLAQCYFQGEEDFNTFDAMPL 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g01887 176 Pfam Helix-loop-helix DNA-binding domain 54 93 IPR011598 GO:0046983
Gma18g01887 176 MobiDBLite consensus disorder prediction 1 19 - -
Gma18g01887 176 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 49 108 IPR036638 GO:0046983
Gma18g01887 176 MobiDBLite consensus disorder prediction 1 57 - -
Gma18g01887 176 SMART finulus 50 99 IPR011598 GO:0046983
Gma18g01887 176 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 44 93 IPR011598 GO:0046983
Gma18g01887 176 CDD bHLH_AtIND_like 45 104 - -
Gma18g01887 176 Gene3D - 45 102 IPR036638 GO:0046983
Gma18g01887 176 MobiDBLite consensus disorder prediction 128 148 - -
Gma18g01887 176 PANTHER TRANSCRIPTION FACTOR LAX PANICLE 1 20 167 - -
Gma18g01887 176 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 20 167 IPR045843 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g01887 Gma-Chr18 51796604 51797134 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g01887 42 119 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 46.914 1.56e-20 85.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma18g01887 HLH 1.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g01887 - - gmx:113000114 328.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g01887 18 51796604 51797134 Gma18g01887 18 51796604 51797134 ECH
Gma18g01887 18 51796604 51797134 Gma07g01422 07 19133643 19134173 GST